Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0623 ATGTCTGCAGCTCTGAATTTGACGCTCGATGACATCATCAAGAACAACAAAAAATCTGGATCCGGAAACTTCCGTGGCCAGAACCGATAATCCGGATCCGGACCTTCACGCCGCTCCCCTAACCGTGCTGCCAACCGCGCCGCTCCATATGCCACCGCCAAGGCGCCCGAGGCGACTTGGAAACACGATCTACACGCAGATCAGCTCGTGGCTGCGGCGGATCCTGCTCAAGGTGGTCTTGCGTCTTCCATGGAAACTAGGACCAAACTTTACATTTCTAACTTGGATTATGGCGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGATGACCTGAAACGGCATGGGGTTCACTATGACAGGAGTGGAAGATTGGAGGGTACTGCAGAAGTAATATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCGATTAGATGGGAAAACAATGAAGATAGAGATTGTGGGAACAAACATTTCTACGCCTGGTGTTCCTGCTGCAAACAGAGCTATTGGAAATTTGAATGGAGTTCCTCGAAGCGGACAAAGAAGAAGTGGGGCATTTAGAAAAGCAGGAGGAAGAGGGCAAGGCATTCAAAGGGATCGAGGTCAAGGAAGAGGTCGTGGTGGAGGAAGACGTGATGAAAAATTATCTGCAGATGACTTGGATGCTGATCTGGAGAAATATCATGCAAGGCAATCCAATTGA 732 0.4754 MSAALNLTLDDIIKNNKKSGSGNFRGQNR*SGSGPSRRSPNRAANRAAPYATAKAPEATWKHDLHADQLVAAADPAQGGLASSMETRTKLYISNLDYGVSNDDIKELFSEVDDLKRHGVHYDRSGRLEGTAEVIFSRRADAVAAVKRYNNVRLDGKTMKIEIVGTNISTPGVPAANRAIGNLNGVPRSGQRRSGAFRKAGGRGQGIQRDRGQGRGRGGGRRDEKLSADDLDADLEKYHARQSN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0623 242 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 239 - -
Vra2g0623 242 MobiDBLite consensus disorder prediction 212 242 - -
Vra2g0623 242 Gene3D - 71 228 IPR012677 -
Vra2g0623 242 MobiDBLite consensus disorder prediction 16 54 - -
Vra2g0623 242 MobiDBLite consensus disorder prediction 180 242 - -
Vra2g0623 242 SUPERFAMILY RNA-binding domain, RBD 81 191 IPR035979 GO:0003676
Vra2g0623 242 Pfam C-terminal duplication domain of Friend of PRMT1 187 238 IPR025715 -
Vra2g0623 242 SMART rrm1_1 88 160 IPR000504 GO:0003723
Vra2g0623 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 158 IPR000504 GO:0003723
Vra2g0623 242 CDD RRM_THOC4 87 161 - -
Vra2g0623 242 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 239 - -
Vra2g0623 242 SMART FoP_duplication_2 174 241 IPR025715 -
Vra2g0623 242 MobiDBLite consensus disorder prediction 16 39 - -
Vra2g0623 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0623 Vra-Chr2 4908218 4919239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0623 K12881 - gmx:100775827 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0623 2 4908218 4919239 Vra2g0623 2 4908218 4919239 ECH