Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0608 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTAGCAGCTTTGTTGCACACGCACCCTTCTCTCATGAACCACACCACTGTCTATGATCACCACTCCCCTCTTCATATTGCCGCTGCTAATGGTCAGATCCAGGTTTTATCATGGCTTTTGGATGGATCTGTGAATCCGGATGCGTTGAATCGCCAAAAGCAGACACCGCTAATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTCGAAGCTGGTGCTAATGTGTTAATGTTTGATGCGTGCTATGGAAGGACCTGCTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTGAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCCGTGGCTGCTTCTTGGGGTTTTGCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCACTGCACTTGGCAGCCCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGGTCCTTGGATTGCATCAGGGAACTGTTGGCATGGGGTGCTGATCGCCTTCAACGTGATGCTTCTGGGCGTATACCTTATGTAGTTGCTCTTAAGCACAGACACAACGCATGTGCAGCACTGCTGAATCTTTCGGCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAAGGTGATCAGTGAGCTTAATCCTGACGCCAAAGAGTTATTAGAGCAGGCCCTGATGAACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCAGCACACTCTGATGGGATAGATGACAGCATCTCTGAGGTTAGTGAGACGGAGTTATGTTGCATCTGCTTTGAGCAAGTGTGCACAATTGAGGTGCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTATTGTCCCACCAGTTTGTCCATTCTGCAGAAGCAACATAGCAAGATTGGTGGTTGTGAAAAAAGAAAGCTCTCATGACATTGATCAAGATGGTGCTGACATTACTTGTTCCAAGCCTAGCAAGTCAAGGAAAACCCGAAACATGAACGAGGGTGGCAGCAGCAGCATCAAGGGACTATCAAGTGTGAACTCATTTGGAAAGATGGGTGGCCGCAGCTCCGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1344 0.4866 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLHTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDALNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSAAEPLVWPSSLKVISELNPDAKELLEQALMNANREREKNILKGSDYSLPSPAHSDGIDDSISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRIVPPVCPFCRSNIARLVVVKKESSHDIDQDGADITCSKPSKSRKTRNMNEGGSSSIKGLSSVNSFGKMGGRSSGKIAAENEWEDDKQQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0608 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Vra2g0608 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Vra2g0608 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vra2g0608 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Vra2g0608 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 442 - -
Vra2g0608 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 442 - -
Vra2g0608 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Vra2g0608 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Vra2g0608 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vra2g0608 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Vra2g0608 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vra2g0608 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Vra2g0608 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vra2g0608 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Vra2g0608 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Vra2g0608 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Vra2g0608 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Vra2g0608 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Vra2g0608 447 MobiDBLite consensus disorder prediction 387 404 - -
Vra2g0608 447 Gene3D - 9 145 IPR036770 -
Vra2g0608 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Vra2g0608 447 Coils Coil 272 292 - -
Vra2g0608 447 Gene3D - 198 252 IPR036770 -
Vra2g0608 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 387 IPR013083 -
Vra2g0608 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Vra2g0608 447 SUPERFAMILY RING/U-box 313 374 - -
Vra2g0608 447 Gene3D - 146 197 IPR036770 -
Vra2g0608 447 MobiDBLite consensus disorder prediction 405 427 - -
Vra2g0608 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Vra2g0608 447 MobiDBLite consensus disorder prediction 387 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0608 Vra-Chr2 4789102 4792346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0608 12 330 Miscellaneous Gene Families AT5G60070 27.003 1.68e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0608 - - gmx:100800611 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0608 2 4789102 4792346 Vra2g0608 2 4789102 4792346 ECH
Vra4g0242 4 5091147 5094325 Vra2g0608 2 4789102 4792346 PCT