Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0586 ATGAATTTTTCAAGGATTGCGCGCTCTCTGTCGCGCTCATCTCGAAATTTATCACAGGGTAATGGGAGGTTGGGAACCCTTACAGGAATACAACGGACGAATACGTGTTCTGATGGAGCGGAATCGGTATTAGGGTTTGTTAGGAGCTATGTTTCTTCTGCCAGAGCTTCCAATTACCGCATCTTTTCTTATTTGCCTGATTTTAAATCCGTTGCTGCGAACCCTAGGGTTCGCCGATTGTTTTCCAGTGAAGCCCCGAAGAAAAAGAATTATGAAAAGTTTTATCCCAAAGAGAAGAAGGAAGCTCCGAAGGAAGATGGCAAAAAATATGATTCTAAAGACAACTCAAATGCAAACACAGATGAACATGGAAATTTTCAGGAAACTTTCATGAAGCAAGTTCAAAATATAATCACCCCATTATTGGTTATGGGGCTATTTCTTTCAACCTTTTCTAATGGTCCCCGTGAACAGCAGGAGATTAGCTTTCAGGAATTTAAAAATAAGCTTTTAGAACCGGGATTAGTAGACCATATTGTTGTCTCAAACAAATCGGTTGCTAAAGTATATATAAGGAACTCTCCTCGCAACCAAATAGATAGTGAAGTAGTCCAAGGGACCTTGCCTGCAAAGGAATATGGAGGTCAGTATAAATATTATTTTAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTACAGGAAGCGCAAGAAGCTCTTGGCATTGACTCTCATGATTTTGTGCCCGTAACATATTCTGCTGAGATGGTTTGGTACCAGGAATTGATGAGATTTGCTCCAACACTCTTATTGTTGGGATCTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGATTTGGTGTTGGTGGAGGTGGTGGTGGTAAGGGTGCTCGTGGAATATTCAACATAGGGAAAGCCCCAGTTACAAAAGTAGACAAAAATACTAAAAATAAGATCTATTTTAAAGATGTTGCTGGCTGCGATGAGGCAAAACTTGAAATTATGGAGTTTGTCCATTTCCTCAAGAATCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTGGGTCCTCCAGGAACAGGAAAAACACTTCTAGCAAAAGCAACTGCAGGAGAGTCTGGGGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGAGCATCAAGGGTGAGAAACTTGTTTCTAGAAGCAAGGCAGTGTGCTCCGAGTATAATATTTATTGACGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGTGGTTTTTCTGGTTCAAATGATGAGCGTGAAAGCACGTTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTTCTGGGGTTGTTGTGTTGGCAGGAACAAATAGGCCTGATATCTTAGATAAAGCTCTTCTTAGACCGGGGCGATTTGACCGCCAAATAGCAATTGACAAGCCTGATATTAAAGGGCGAGACCAGATATTTCAAATCTACTTGAAGAAGATCAAACTTGACCGTGAACCTTCATATTATTCTCAGAGACTTGCAGCCCTTACTCCTGGATTTGCTGGAGCAGACATTGCCAATGTCTGCAATGAGGCGGCTCTGATTGCTGCAAGGAGGGAGGTGACACAAGTCACAATGGACCATTTTGAGTCGGCCATCGATAGGATCATTGGTGGTTTGGAAAAGAAGAACAAGGTAATAAGCAAGGTGGAAAGGCGTACTGTTGCTTTTCACGAATCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACACGCTGAGCCACTGTTAAAAGTAACCATCGTTCCACGTGGCTCAGCAGCTCTTGGATTTGCACAATATGTTCCAAGCGAAAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACACTTGGTGGTCGGGCTTCTGAGCAGGTTCTTATAGGGAGAATATCAACAGGAGCACAAAATGACTTGGAAAAGGTTACCAAAATGACATATGCCCAAGTAGCAGTTTATGGTTTCAGCGACAAAGTGGGTCTCCTTTCCTTCCCTTCAAGAGAGGACTCATTTGAGATGTCCAAACCATACAGCAACAAAACTGCCGCAATCATTGATAGCGAAGTGCGCGATTGGGTGAACAAAGCATACGAACGAACGGTACGGCTAATCGAGGAACACAAGGAACAAGTTACTCAACTTGCTGAGTTGTTGCTTGAAAAAGAAGTACTTCACCAGGACGACTTGGTTCGAATTTTAGGTGAGCGACCATTTAAGGCCACTGAAGCCACTAATTATGATAGATTTAAGAAAGGCTTTGAAGAAGAAGAAGATGAAAAGGTTGCAGAAAGTACCATTGTAGATGTGCCTCAGGAAGGTGGTGGATCTTCTCCTTTAGAGCCTCAGGTTGTTCCCAGATAG 2436 0.4253 MNFSRIARSLSRSSRNLSQGNGRLGTLTGIQRTNTCSDGAESVLGFVRSYVSSARASNYRIFSYLPDFKSVAANPRVRRLFSSEAPKKKNYEKFYPKEKKEAPKEDGKKYDSKDNSNANTDEHGNFQETFMKQVQNIITPLLVMGLFLSTFSNGPREQQEISFQEFKNKLLEPGLVDHIVVSNKSVAKVYIRNSPRNQIDSEVVQGTLPAKEYGGQYKYYFNIGSVESFEEKLQEAQEALGIDSHDFVPVTYSAEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGFGVGGGGGGKGARGIFNIGKAPVTKVDKNTKNKIYFKDVAGCDEAKLEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGASRVRNLFLEARQCAPSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQIAIDKPDIKGRDQIFQIYLKKIKLDREPSYYSQRLAALTPGFAGADIANVCNEAALIAARREVTQVTMDHFESAIDRIIGGLEKKNKVISKVERRTVAFHESGHAVAGWFLEHAEPLLKVTIVPRGSAALGFAQYVPSENLLMTKEQLFDMTCMTLGGRASEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPSREDSFEMSKPYSNKTAAIIDSEVRDWVNKAYERTVRLIEEHKEQVTQLAELLLEKEVLHQDDLVRILGERPFKATEATNYDRFKKGFEEEEDEKVAESTIVDVPQEGGGSSPLEPQVVPR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0586 811 MobiDBLite consensus disorder prediction 92 123 - -
Vra2g0586 811 MobiDBLite consensus disorder prediction 92 118 - -
Vra2g0586 811 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 27 810 - -
Vra2g0586 811 Pfam FtsH Extracellular 139 245 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Vra2g0586 811 Gene3D - 304 491 IPR027417 -
Vra2g0586 811 ProSitePatterns AAA-protein family signature. 462 480 IPR003960 GO:0005524|GO:0016887
Vra2g0586 811 Gene3D - 493 577 - -
Vra2g0586 811 Pfam AAA+ lid domain 521 559 IPR041569 -
Vra2g0586 811 PANTHER ATP-DEPENDENT PROTEASE 27 810 - -
Vra2g0586 811 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 258 758 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra2g0586 811 Pfam ATPase family associated with various cellular activities (AAA) 359 491 IPR003959 GO:0005524|GO:0016887
Vra2g0586 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 565 IPR027417 -
Vra2g0586 811 SUPERFAMILY FtsH protease domain-like 575 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra2g0586 811 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 785 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra2g0586 811 Gene3D - 144 257 - -
Vra2g0586 811 Gene3D Peptidase M41 578 777 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra2g0586 811 MobiDBLite consensus disorder prediction 775 811 - -
Vra2g0586 811 Pfam Peptidase family M41 575 756 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra2g0586 811 SMART AAA_5 354 494 IPR003593 -
Vra2g0586 811 Coils Coil 722 742 - -
Vra2g0586 811 CDD AAA 355 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0586 Vra-Chr2 4635334 4641131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0586 3 810 Miscellaneous Gene Families AT2G29080 74.724 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0586 K08956 - gmx:100806656 1323.15