Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0581 ATGCTGTCTGAATTTGAAAGAAGACCGATGATTGGGAGTAACGAGGGTTCTTTTGGAGATGAACTGGAAAAGGAGATAGGGATGTTGCTGCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATCTTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTAGTGGTGGTGCTGGCGGCGGTGCTGCTGGTGCTAGTGGTGCCTTTTCTGAGTTTCAAGGGACTAGAGATGTTAATGGGATTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTACGTACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGATGTCAAAGGAGGATTGGAGGTTTCAGCAGAGACTTAAAGGTGGAGCTTCAGTTCTTGGTGGAATAGGAGATAGAAGGAAAGTGAACAGGACTGAAGAAAATGGTGGTAGGTCGATGTTTTCTACCCCACCGGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGACAATGAAAAAACAAGAGGTACTGCCGAGTGGGGTGGTGATGGACTAATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGTTTTGCAGAAATTTTCCAGGATGATTTGGGGGGTAATACCTCTGTCACGGGCCCTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGATATAATTAGTTCTGCTGAAGCGGAGTTGGCTCATTTACGCCGTGAGTCCACGACCACAGATGCACCAAGGCCAGGAACGAATGTGCAAGGATCATCTGCTTCCCAAAATACTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCAGTGGGGTCTTCNTTNTCNAGAAGCACTACTCCTGATCCACAGCANGTTGCNAGGGCTCCNAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCCATTGCTTCTGATAAGAGAGGTGTTTCCAGTCCAGATGGATTTGATGGTGTTTCATCTGGAATCAACGGGTCATCAGATCTTATGGCTGCATTGTCAGCAATGAATTTGTCAGCAGATGACATGTTAGATGGTGATAATCATTTGCCATCNCAGGTTGAATCAGATGTTGATAATCACCGGAGATATCTTTTTGGTAGGCAAAGTGGGCAGGATCATGGAAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTGCAAAATTCAAGTAAGAGCAGGAGCGGATCTGATCCTAATCCTAACAATGCATCCTTGGACAGGCAGGTTGAGCTACAAAAGTCTAATGTTTCTTCCAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCTCCTCAGTACCAGCCTTTAGATGGTACAAATTCGTCATTTAGNAACTATGGTATGAGTGGATATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAATCAACTGGGCACTGGTAATCTGCCTCCATTGTTTGAAACGGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGACTCAAGAATTCTTGGAAGTGGTTTGGCTTCTGGAGCTACTGCTCCATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGGAAGTGCTCTTCAGGCCCCTTTTGTTGATCCCATGTATCATCAGTACCTGAGAACATCTGAGTATGCAGCACAACTTGGTGCTCTNAGTGACCCCTCTGTCGACAGGACCTACTTAGGTAATTCATACATGAACATACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATTCTCTCACCTCAGAAATCTCAATACAATGTACCACTGGGTGGTAAATCAGGAAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTTGTGTCNACTTCTCCAGTAGGACCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATNAGGAATTTAGCTGNGGTAATGGGACCTTGGCATGTAGATACCGGGAACATTGATGAAAGNTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAAGCAATAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCACGTTGTGGAATTCAGTGCTGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTACTGAAGAAAAAAATATGGTCTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAATTGGCCAACAAACTTCTTGGCCATGTTCTGACACTGAGCCTTCAAATGTATGGCTGCCGAGTCATCCAGAAGGCCATCGAAGTTGTTGATCTNGATCAGAAGATAGAGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAACCATGTCATTCAGAAGTGTATTGAATGCGTCCCTGAAGATGCAATCCATTTTATTGTGTCAACTTTTTTTGATCAAGTCGTTACTCTCTCAACCCATCCATATGGTTGCCGTGTGATACAGAGAGTACTGGAGCACTGCAAAGNTCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGGGCAGTTAGTATGTTAGCTCAGGACCAGTATGGCAACTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGNTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAGATGAGTCAACAGAAGTTTGCATCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTGGTACATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAANTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAGCGCGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGGAAGCACATTGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCAGCTCAGTCTCCCCAACCTGCTTAG 3156 0.4414 MLSEFERRPMIGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFSGGAGGGAAGASGAFSEFQGTRDVNGIVSEEELRSDPAYLTYYYSNVNLNPRLPPPLMSKEDWRFQQRLKGGASVLGGIGDRRKVNRTEENGGRSMFSTPPGFNMRKQESEVDNEKTRGTAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGGNTSVTGPPSRPASRNAFDDNDIISSAEAELAHLRRESTTTDAPRPGTNVQGSSASQNTGLPASYSYAAAVGSSXSRSTTPDPQXVARAPSPCITPIGGGRAIASDKRGVSSPDGFDGVSSGINGSSDLMAALSAMNLSADDMLDGDNHLPSQVESDVDNHRRYLFGRQSGQDHGKQHAYLKKSESAHLQNSSKSRSGSDPNPNNASLDRQVELQKSNVSSNNSYFKGSPTSHFSRGGSLPPQYQPLDGTNSSFXNYGMSGYAGNPALASLMTNQLGTGNLPPLFETVAAASAMASPGMDSRILGSGLASGATAPSDVHNLGRMGNQIPGSALQAPFVDPMYHQYLRTSEYAAQLGALSDPSVDRTYLGNSYMNILELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGPGSPVRHNELNMRFASGXRNLAXVMGPWHVDTGNIDEXFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKXPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVHEMLGSTDENEPLQAMMKDQFAXYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0581 1051 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 696 1036 IPR033133 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 752 787 IPR001313 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 716 751 IPR001313 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 933 968 IPR001313 GO:0003723
Vra2g0581 1051 Gene3D - 696 1042 IPR011989 -
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 897 932 IPR001313 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 824 859 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 864 899 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 792 825 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 983 1012 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 720 754 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 756 789 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 938 971 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 903 934 IPR001313 GO:0003723
Vra2g0581 1051 Pfam Pumilio-family RNA binding repeat 835 858 IPR001313 GO:0003723
Vra2g0581 1051 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1044 - -
Vra2g0581 1051 MobiDBLite consensus disorder prediction 152 198 - -
Vra2g0581 1051 MobiDBLite consensus disorder prediction 260 304 - -
Vra2g0581 1051 Pfam Nucleic acid binding protein NABP 307 715 IPR012940 -
Vra2g0581 1051 SUPERFAMILY ARM repeat 699 1033 IPR016024 -
Vra2g0581 1051 MobiDBLite consensus disorder prediction 159 173 - -
Vra2g0581 1051 MobiDBLite consensus disorder prediction 217 345 - -
Vra2g0581 1051 MobiDBLite consensus disorder prediction 403 475 - -
Vra2g0581 1051 SMART pum_5 788 823 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 975 1010 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 752 787 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 824 859 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 897 932 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 716 751 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 933 968 IPR001313 GO:0003723
Vra2g0581 1051 SMART pum_5 860 896 IPR001313 GO:0003723
Vra2g0581 1051 MobiDBLite consensus disorder prediction 360 475 - -
Vra2g0581 1051 MobiDBLite consensus disorder prediction 371 402 - -
Vra2g0581 1051 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1044 - -
Vra2g0581 1051 CDD Pumilio 712 1032 IPR033712 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 860 896 IPR001313 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 788 823 IPR001313 GO:0003723
Vra2g0581 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 969 1010 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0581 Vra-Chr2 4594542 4601589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0581 K17943 - gmx:100803806 1790.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0581 2 4594542 4601589 Vra2g0581 2 4594542 4601589 ECH