Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0579 ATGGGTTTGAAGCCAAATGTGGTGACTTGGAACTCTTTGATATCTGGGTTTTCGCAGAAGGGTGACCTGGGAATGGTGTCTGAGATTTTTAGAGTAATGATTTCAGATGGGTTGGAGCCTGATGTGGTATCATGGACTTCTGTTCTATCTGGTTTTGTGCAGAACTTTCGTAATAACGAGGCATTTGACGCGTTTAAGCAAATGTTGAGTCACGGGTTCTGCCCAACTTCGGCTACTATAAGCACCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAGTTAGAATTGGGAGAGAGATTCATGGCTACGCTTTGGTGACTGGGGTGGAGGGAGATTTATATGTAAGGAGTGCTCTTGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCAANGAATTTGTTTAGTAGGATGGCTGAGAAGAACACGGTTACTTGGAACTCCATCATTTTTGGTTTTGCGAATCATGGGTATTGCGTGGAAGCTATTGAGCTCTTCAATCAGATGGAGAAGGAAGGGGCTGCCAAGCTGGACCATTTAACTTTTACGACAGCTCTCACTGCATGCAGTCATGTTGGAGACATTGAACTTGGGCAGAGGTTGTTCAAGGTCATGCAAGAAAAATACGGTATTGAGCCACGGCTGGAGCATTATGTGTGCATGGTGGATCTTCTTGGTCGAGCGGAGAAACTTGATGAAGCTTATTGCATGATAAAGGCTATGCCAATTGAACCTGATTTGTTTGTGTGGGGTGCATTACTGGCTGGCTGTAGAAATCACGGTAATGTAGAGCTTGCCGAAATCGCTTCTCTGCATCTGATGGAATTAGAGCCCGAGAGTGCTGCAAACCATCTTCTGTTGTCTAGCCTATATGCTGATGCAGGCAAATGGGGAAAGGTTGAGAGGATCAAGAAAAGGATAAAGAAGGGAAAGCTCAGAAAACTTCAAGGCTTGAGTTGGATAAATAATTTATAA 975 0.441 MGLKPNVVTWNSLISGFSQKGDLGMVSEIFRVMISDGLEPDVVSWTSVLSGFVQNFRNNEAFDAFKQMLSHGFCPTSATISTLLPACATAARVRIGREIHGYALVTGVEGDLYVRSALVDMYAKCGFISEAXNLFSRMAEKNTVTWNSIIFGFANHGYCVEAIELFNQMEKEGAAKLDHLTFTTALTACSHVGDIELGQRLFKVMQEKYGIEPRLEHYVCMVDLLGRAEKLDEAYCMIKAMPIEPDLFVWGALLAGCRNHGNVELAEIASLHLMELEPESAANHLLLSSLYADAGKWGKVERIKKRIKKGKLRKLQGLSWINNL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0579 324 Pfam E motif 260 322 IPR046848 -
Vra2g0579 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Vra2g0579 324 Pfam PPR repeat family 141 190 IPR002885 -
Vra2g0579 324 Pfam PPR repeat family 40 88 IPR002885 -
Vra2g0579 324 TIGRFAM PPR: pentatricopeptide repeat domain 43 76 IPR002885 -
Vra2g0579 324 TIGRFAM PPR: pentatricopeptide repeat domain 144 173 IPR002885 -
Vra2g0579 324 TIGRFAM PPR: pentatricopeptide repeat domain 8 42 IPR002885 -
Vra2g0579 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
Vra2g0579 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 6 40 IPR002885 -
Vra2g0579 324 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 322 - -
Vra2g0579 324 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515
Vra2g0579 324 Gene3D Tetratricopeptide repeat domain 120 323 IPR011990 GO:0005515
Vra2g0579 324 PANTHER OS03G0271300 PROTEIN 18 322 - -
Vra2g0579 324 Pfam PPR repeat 217 241 IPR002885 -
Vra2g0579 324 Pfam PPR repeat 8 38 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0579 Vra-Chr2 4586075 4587354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0579 2 321 Glycoside Hydrolase AT3G49170 36.250 1.45e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0579 - - vra:106778626 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0579 2 4586075 4587354 Vra2g0579 2 4586075 4587354 ECH