Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0576 ATGGCGTCAACTACTCTCTCCAACTACTGGCTCTCTCAGTTCAACCCACTGCACAATCAACGGAAAAAGAGGCCAAAATCTCTATTCTCATCTTCTCGAACCACTCTACGCCTTCTTTCTTCCATTAACGATCATTTGGCGCTCACACGTGTCACATATCCGCTTCTCCAGTCTCATTCTACTCCCAAGCGCAGATTCCACGTTGGAGTGCAGAAAGATTATTCTGATGGGGAAAGCTCTGAGTCGCTTGTTTCTGACGCAACATACCAAGAGGAATTTTCGTGGTCTTCTGTAATTCTTCCGTTTCTGTTCCCTGCATTGGGTGGCTTATTATTTGGTTATGATATTGGTGCCACCTCCGGTGCTACAATCTCATTGCAGTCACCTGACCTTAGCGGAATAACATGGTTCAATCTTTCTGCCATTCAGCTTGGACTGGTGGTTAGTGGTTCCCTATATGGGGCTCTTCTGGGCTCACTTCTCGCATATGCTATAGCTGATTTCCTTGGGAGGAAGCGACAACTCATTGCTGCAGCACTGTTGTATATAGTTGGTGGTGTGGTTACTGCATATTCACCAGAACTTGGTGTTCTTTTAGCAGGAAGGCTGCTTTATGGACTTGGTATAGGTTTGGCCATGCATGGGGCTCCTTTGTATATTGCAGAGACATGTCCATCACAAATCCGTGGTACCCTACTCTTCATTGTCCTGGGGATTCTGCTGGGTTATTTTGTAGGAAGCTTTCTGATTGATACAGTTGGGGGATGGCGGTTCATGTATGGATTTAGTGCTCCAGTTGCTGTATTAATGGGGCTAGGAATGTGGACTCTCCCCGCTTCTCCTCGTTGGCTGCTTCTCAGAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCCATTGTTTCCCTGAGCAAACNAAGGGNTCGACCGCCTGGTGACAGAGAATCTGAGAGACAAATAGAAGATACCCTTCTCTCATTGAAGTCTGCCTATGGACAACAGGAATCAGAGGGGAATTTCTTAGAGGTGTTTCAGGGTCCCAATCTGAAAGCTTTCATAATTGGTGGAGGACTAGTNTTATTTCAACAGATAACAGGTCAACCAAGTGTTCTATATTATGCAGGCCCAATTCTTCAGAGCGCTGGATTTTCTGCTGCATCTGATGCTACAAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTACTAATGACTTGGATTGCTGTCCTAAAAGTTGATGATTTGGGGAGAAGGCCTCTGTTGATTGGAGGTGTCAGTGGCATTGCCCTCTCTTTAGTTCTCCTTTCTGCTTATTATAAATTTCTTGGAGGGTTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCCATAAGTTGGTTAATGGTATCAGAGATCTTCCCACTTCGCACAAGAGGAAAGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTAGTCACTTTTGCATTCTCTCCATTAAAGGAGTTTCTAGGAGCAGAAAACCTTTTTCTCCTTTTTGGGGCTATTGCTGTTCTATCACTTCTGTTCGTTATCTTTTCTGTCCCGGAGACAAAAGGCTTGAGTTTAGAAGATATAGAATCCAAAATCTTGAAATGA 1662 0.4404 MASTTLSNYWLSQFNPLHNQRKKRPKSLFSSSRTTLRLLSSINDHLALTRVTYPLLQSHSTPKRRFHVGVQKDYSDGESSESLVSDATYQEEFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPDLSGITWFNLSAIQLGLVVSGSLYGALLGSLLAYAIADFLGRKRQLIAAALLYIVGGVVTAYSPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLLFIVLGILLGYFVGSFLIDTVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLRAVQGKGSFQDLKEKAIVSLSKXRXRPPGDRESERQIEDTLLSLKSAYGQQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIAVLSLLFVIFSVPETKGLSLEDIESKILK* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0576 553 ProSitePatterns Sugar transport proteins signature 2. 204 229 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0576 553 SUPERFAMILY MFS general substrate transporter 102 548 IPR036259 -
Vra2g0576 553 TIGRFAM SP: MFS transporter, sugar porter (SP) family 96 547 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0576 553 Pfam Sugar (and other) transporter 104 548 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra2g0576 553 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 3, CHLOROPLASTIC 51 553 - -
Vra2g0576 553 CDD MFS_GLUT10_12_Class3_like 104 547 - -
Vra2g0576 553 PRINTS Sugar transporter signature 109 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0576 553 PRINTS Sugar transporter signature 199 218 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0576 553 PRINTS Sugar transporter signature 365 375 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0576 553 PRINTS Sugar transporter signature 452 473 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0576 553 PRINTS Sugar transporter signature 475 487 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0576 553 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 51 553 - -
Vra2g0576 553 ProSiteProfiles Major facilitator superfamily (MFS) profile. 101 540 IPR020846 GO:0022857
Vra2g0576 553 Gene3D MFS general substrate transporter like domains 92 551 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0576 Vra-Chr2 4547848 4551470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0576 63 553 Organic Solute Cotransporters AT5G59250 78.357 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0576 - - gmx:100809316 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0576 2 4547848 4551470 Vra2g0576 2 4547848 4551470 ECH