Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0564 ATGGGTGAGACGAACAGTGGTGGCAAAAGCAGCAGATGGTGTCTGCGGGGGATGACAGCTCTGGTCACCGGTGGATCCAAAGGAATCGGATATGCTATCGTGGAGGAGTTGGCACAGCTTGGAGCCACTGTACACACTTGTTCTCGAAACGAAGCTGAACTCAGTGAATCCTTAAATGAATGGACCACAAAAGGATACAGAGTAACTGGTTCCGTCTGTGATATGACCTCTCGTGTTAACAGAGAAGAGCTGATAGCAAGAGTCTCCTCTCAGTTCAATGGAAAACTCAATATCCTTGTAAACAATGTGGGAACAAACATACTGAAACAGACCATGGATTTCACAGCGGAAGATTTCGCATTTCTGATGAATACGAATCTTGAATCTTGTTTCCACTTAAGCCANCTTGCACATCCTCTCCTAAAAGCTTCAGAAGCTGCAAGTATCATTTTCATGTCCTCNATTGCTGGTGTTGTAGCTACAAACNTAGTATCCGTTNTNTATAGTGCAACAAAAGGAGCAATGAACCAAATGACAAAAAGTCTTGCATGTGAATGGGCCAAAGACAACATAAGGAGTAATTGTGTTGCACCTTGGGTAATCAGAACCCCTCTGGCGGAAAAGCACTTGAAAGAGGAAAGAGTTGTGAATGCTGTAATATCTCAAACCCCTCTGGGACGGATTGGAGAGGCAGAGGAGGTGTCTTCGTTGGTGGCATTTCTGTGCTCGCCTGCAGCATCTTACATCACTGGACAGACCATTTGTGTTGATGGCGGCTTCTCTGTGAACGGCCTCCATATATTGCAGCCTTAG 813 0.4514 MGETNSGGKSSRWCLRGMTALVTGGSKGIGYAIVEELAQLGATVHTCSRNEAELSESLNEWTTKGYRVTGSVCDMTSRVNREELIARVSSQFNGKLNILVNNVGTNILKQTMDFTAEDFAFLMNTNLESCFHLSXLAHPLLKASEAASIIFMSSIAGVVATNXVSVXYSATKGAMNQMTKSLACEWAKDNIRSNCVAPWVIRTPLAEKHLKEERVVNAVISQTPLGRIGEAEEVSSLVAFLCSPAASYITGQTICVDGGFSVNGLHILQP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0564 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 262 IPR036291 -
Vra2g0564 270 Pfam Enoyl-(Acyl carrier protein) reductase 26 261 - -
Vra2g0564 270 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vra2g0564 270 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Vra2g0564 270 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Vra2g0564 270 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vra2g0564 270 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Vra2g0564 270 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Vra2g0564 270 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 266 - -
Vra2g0564 270 PANTHER TROPINONE REDUCTASE 3 266 IPR045000 GO:0016491
Vra2g0564 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vra2g0564 270 Gene3D - 3 265 - -
Vra2g0564 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Vra2g0564 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0564 Vra-Chr2 4440764 4442380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0564 11 265 Miscellaneous Gene Families AT2G29150 66.275 1.59e-122 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0564 K08081 - gmx:100785449 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0564 2 4440764 4442380 Vra2g0564 2 4440764 4442380 ECH