Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0559 ATGCGGCAATGGAAACAGTTGGGAGAGGTGTTGGTGGCGGCCTCTATCACCAAAACGCTATCCCACTCTCACTCTGCAACGCTCAATCTCCCACGCGCCGTCGCTCTCGGACTCACCCAGCCCCTTGTTCTGAAAATCCTTTCCAACCAATCGATTCACCCTTCGCAAAAGCTTCGTTTCTTCGAATGGACCCGCTCCCACCACAACCCTTCCCCGGCCGCGTACTCCCTCGTCCTCCGTTCCCTCTCCAGCGGCGGATTCTTCTCCGACATCCCCTCCGTCCTGCATTCCATGACGCAAGACGGCGTCGTTCTCGATCCCCACTCCCTCAACCTCCTCCTCCACTCCTTCATTCTCTCCTCGAACTTCAGTTTAGCTTTCCAATTATTAGATTACGTGCAGCACCTTCACCTCGATGCCACCACAATCTACAATACCCTCATCGCTGCTTTACTCACAAAACACCAACTCTCTCTCGCGTTATCCATCTTCTTCAAGCTCCTCGACGCCGTCGATTCGAAGTCCATCGCTTGCAACCAATTGTTGGTTTCTCTGAGAAAAGCGGATATGAGGGTGGAGTTTAAGCAAGTGTTTACAAAATTGAGGGAGAAGAAAGGGTTTTCGTTTGATACGTCGGGTTACAATGTGTGTATTCATGCATTTGGTTGTTGGGGTGATTTGGCTACTTCCTTCGCGCTCTTCAAGGAGATGAAGGACGATGGTAAGGGGTTGGTTGCCCCTGATTTGTGCACATACAACAGTCTCATCACTGCGCTTTGCAGACTTGGCAAGGTGGACGATGCGCTTGTTGTGTGGGAGGAGCTCAATGGCTCAGCTCACCAACCTGATCGCTTCACCTACACAAACCTAATTCATGGCTGTTGCAGAACTTTTAGAATGGGTGATGCCACAAGGGTTTTTAACCACATGCAGAGCCATGGGTTCCGTCCGGATACGATTGTTTATAATTCTCTGCTGGATGGACATTTTAAGGCCACCAAGGTTGTTGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAAGAAGGGGTGAGACCTTCTTGCTGGACTTATAATATTCTCATTCATGGGCTGCTTAGGAATGGCAGGGCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTACCTACAGCATTGTTGTGTTGGAGCTTTGTAAGGAGGGTCAACTGGAGGAGGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTACAGTTGACCTTGTCACCATAACATCCCTGCTGATTAGCATTCATAGGCACGGTCGCTGGGATTGGACGGACCGGCTTATGAAGCATATCAGAGAAGGTAATTTGGTACTTTCCGTTCTTAAGTGGAAAACTGGAATGGAAGCTTCTATGAAGAACCCTCCTGGAAAGAAAAAGGATTACTCACCTATGTTCCCTTCCAGAGGAGATTTTAGTGACATCATGAGCTTCATGACTGGTGCCCAGGATACCACCAACATTAATGATGGGCAGGAAACTTCCTTCGATGGGATTGACGAGTGGTCATCATCACCGCACATGGATAAATTGGCCAATCAAATGTGCTCTACTGGCTATTCTTCCCAGCTTTTTGCTCCCTCTCGCGGTCAAAGAGTCCAAGAAAAAGGACAGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCAAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGAGTCCAGTGAGTTATTCTTATAATTCTATCATGAGTTCTTTTGTCAAAAAGGGTTATTTCACTGAGGCTTGGGCTGTTCTGGCTGAAATGGGAGAAAAATTTTGTCCTACTGATATAGCTACATACAATATGATACTTCAAGGTTTAGGAAAGATGGGACGAGCTGATCTAGCTAGTGCTGTTCTTGATAGGCTACTGAAGCAGGGAGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTCTGGGGAAGGCAGGCCGAATCAATGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCAGTGGAATAAATCCGGATGTTGTCACTTACAATACATTGATTGAAGTTCACAGCAAGGCAGGGCTATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGACGCTGGATGCGCCCCTAACCATGTTACAGACACAACTTTAGATTATCTTGGGAGGGAAATTGATAAATTGAGATTCCAAAGGGCATCGATTTTGAGTGAAAAAAATGATCCTTCTTGA 2304 0.4618 MRQWKQLGEVLVAASITKTLSHSHSATLNLPRAVALGLTQPLVLKILSNQSIHPSQKLRFFEWTRSHHNPSPAAYSLVLRSLSSGGFFSDIPSVLHSMTQDGVVLDPHSLNLLLHSFILSSNFSLAFQLLDYVQHLHLDATTIYNTLIAALLTKHQLSLALSIFFKLLDAVDSKSIACNQLLVSLRKADMRVEFKQVFTKLREKKGFSFDTSGYNVCIHAFGCWGDLATSFALFKEMKDDGKGLVAPDLCTYNSLITALCRLGKVDDALVVWEELNGSAHQPDRFTYTNLIHGCCRTFRMGDATRVFNHMQSHGFRPDTIVYNSLLDGHFKATKVVEACQLFEKMVQEGVRPSCWTYNILIHGLLRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLELCKEGQLEEALQLVEEMESRGFTVDLVTITSLLISIHRHGRWDWTDRLMKHIREGNLVLSVLKWKTGMEASMKNPPGKKKDYSPMFPSRGDFSDIMSFMTGAQDTTNINDGQETSFDGIDEWSSSPHMDKLANQMCSTGYSSQLFAPSRGQRVQEKGQDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVSPVSYSYNSIMSSFVKKGYFTEAWAVLAEMGEKFCPTDIATYNMILQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRINEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGLLKDAYKFLKMMLDAGCAPNHVTDTTLDYLGREIDKLRFQRASILSEKNDPS* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0559 767 PANTHER DEFECTIVE KERNEL35 3 762 - -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vra2g0559 767 Pfam PPR repeat family 317 365 IPR002885 -
Vra2g0559 767 Pfam PPR repeat family 665 708 IPR002885 -
Vra2g0559 767 Pfam PPR repeat family 247 296 IPR002885 -
Vra2g0559 767 Pfam PPR repeat family 596 642 IPR002885 -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Vra2g0559 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 762 - -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Vra2g0559 767 Gene3D Tetratricopeptide repeat domain 650 748 IPR011990 GO:0005515
Vra2g0559 767 Pfam PPR repeat 384 416 IPR002885 -
Vra2g0559 767 Gene3D Tetratricopeptide repeat domain 169 311 IPR011990 GO:0005515
Vra2g0559 767 Gene3D Tetratricopeptide repeat domain 312 385 IPR011990 GO:0005515
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 597 628 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 214 241 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 667 701 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 633 665 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 702 735 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 320 354 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 250 275 IPR002885 -
Vra2g0559 767 TIGRFAM PPR: pentatricopeptide repeat domain 356 384 IPR002885 -
Vra2g0559 767 Gene3D Tetratricopeptide repeat domain 548 648 IPR011990 GO:0005515
Vra2g0559 767 Gene3D Tetratricopeptide repeat domain 386 478 IPR011990 GO:0005515
Vra2g0559 767 Gene3D Tetratricopeptide repeat domain 38 158 IPR011990 GO:0005515
Vra2g0559 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Vra2g0559 767 Pfam PPR repeat 214 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0559 Vra-Chr2 4418111 4420661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0559 560 750 Glycosyltransferase AT1G05670 32.812 2.78e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0559 - - gmx:100788992 1352.04