Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0557 ATGGCTAGTCGTTCCTTCTCGAAAGTTCGGAAAATCTGTGATTTTGGTTCTTTATTAGTGGGACAGCTTACAAGAGCTACTAAACTTATCGAACACTGTTCAGCTCCACTGCCCTTTGTTGAATCTACTTCATTGAAAACGGCGTCGTGTTGGAGGCAATACCACGACGGAAGGCCCAGAGGCCCCCTTTGGAGGGGAAAGAAGCTTATTGGCAAAGAAGCGCTCTTTGTCATATTGGGCTTGAAGAGGTTTAAAGATGACGAGGATAAGCTTCACAAGTTCATCAAATCTCACGTTCTCAGACTCTTGAAGATGGACATGATCGCCGTTCTCACTGAACTTGAGCGTCAAGAACAAGTTTCTCTCGCTCTCAAGATGTTTAAGGTTATGCAAAAGCAAGATTGGTACAAGCCTGATACATTCCTTTATAAGGACTTAATCATTGCATTGGCAAGGTCCAAAAAAATGGACGAAGTGTCCCAATTGTGGGAAAGCATGCGAAAGGAAAATTTGTTCCCTGATTGTCAGACTTACACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCTGCGGATGCGATGAACGTATATGAGGACATGAAGAATTCTCCGGATCCACCTGACGAGTTGCCATTCAGAATTTTGTTGAAAGGACTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAGGAGATTTTTCCTGATTCAAATATCTATGATCCACCACAAGAGATATTTGGCGCGCGCTGA 765 0.4314 MASRSFSKVRKICDFGSLLVGQLTRATKLIEHCSAPLPFVESTSLKTASCWRQYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKDDEDKLHKFIKSHVLRLLKMDMIAVLTELERQEQVSLALKMFKVMQKQDWYKPDTFLYKDLIIALARSKKMDEVSQLWESMRKENLFPDCQTYTEVIRGFLNYGSPADAMNVYEDMKNSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSNIYDPPQEIFGAR* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0557 254 TIGRFAM PPR: pentatricopeptide repeat domain 145 175 IPR002885 -
Vra2g0557 254 TIGRFAM PPR: pentatricopeptide repeat domain 177 203 IPR002885 -
Vra2g0557 254 Pfam PPR repeat family 138 185 IPR002885 -
Vra2g0557 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vra2g0557 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 36 253 IPR044795 -
Vra2g0557 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vra2g0557 254 Gene3D Tetratricopeptide repeat domain 68 254 IPR011990 GO:0005515
Vra2g0557 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 36 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0557 Vra-Chr2 4404475 4406135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0557 97 251 Miscellaneous Gene Families AT4G11690 24.516 1.79e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0557 - - gmx:100798492 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0557 2 4404475 4406135 Vra2g0557 2 4404475 4406135 ECH