Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0547 ATGGTTCAGTATAATTTTAAGAAGATTACTGTGGTGCCAAATGGGAAGGATTTCGTTGATATCATCCTCTCTCGTACCCAGCGGCAGACACCGACTGTTGTGCACAAGGGATATGCAATTTCGCGGCTCCGCCAATTCTACATGCGCAAGGTGAAGTACACTCAGCAGAATTTTTATGATAAGCTCTCTACCATAATTGATGAGTTCCCCAGGCTTGATGATATTCATCCCTTCTATGGGGATCTCCTCCATGTGCTCTACAACAAAGACCATTACAAGCTTGCACTTGGACAAATCAACACTGCTAGGAATCTTATCAGTAAGATTGCCAAAGACTATGTGAAATTGCTGAAGTACGGTGACTCACTGTATCGATGCAAGTGTCTTAAGGTGGCTGCTCTTGGCCGCATGTGCACCGTGATCAAGAGGATTGGCCCGAGTTTGGCTTATCTAGAACAAGTCAGACAGCACATGGCTAGGCTTCCTTCGATTGATCCTAATACAAGGACTGTCTTGATCTGTGGATATCCAAATGTTGGAAAGAGCTCGTTTATTAACAAAATTACAAGAGCTGATGTCGATGTCCAGCCCTATGCTTTCACTACAAAGTCTCTCTTTGTTGGTCACACAGATTATAAATACCTGAGGTACCAAGTAATTGATACACCAGGGATTCTGGACAGGCCGTTTGAAGATCGTAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCGGCAATATTGTTTTTCTTGGATATTTCTGGGTCTTGTGGTTACAGTATTGCTCAGCAGGCCGCTCTGTTTCACAGCATCAAGTCCTTGTTCATGAACAAGCCACTGATCATAGTTTGCAACAAGACTGACTTGCAACCGCTGGATGGGATATCGGAGGAAGATATGAAGTTGGTTACGGAGATGAAAGCTGAAGCCATGAAGACTATAGTTGGTCAAGGAGGTGAGGCAACAAATGACGACGGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCTGTAAAAAATGCAGCATGTGAAAGGTTATTGAATCAGAGGGTAGAAATAAAGATGAAATCAAAGAAAATGAATGACTGCTTGAATAGGTTTCATGTTGCACTACCAAAGCCTCGTGACCAGAAGGAAAGACCATCATGTATTCCTGCAGCAGTTTTAGAAGCTAAAGCTAAGGAAGCCGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTCGAGGATGAGAATGGTGGGGCTGGTGTATACTCAATGAATTTGCGAAAGAGTTACATTTTAGCCAATGATGAATGGAAAGAGGATGTACTGCCTGAAATCTTGGATGGACACAATGTTTATGATTTCATCGATCCTGATATTCTTCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGATGAGAGAGGCAGAAGCTGAGGATGATGATTTTGAGATTGATGGATCTGAGTTGACTCCTGAACAGAAAGAAGCTTTAGCCGAGATTAGGAAAAAGAAAAGCTTGCTCATCCAGCAGCACAGGATTAAAAAGAGCAATGCAGAGAGTAGGCCAACTGTTCCTAGAAAGTTTGACAAGGACAAACAGTTCACGTCAGAGAGAATGGGAAGACAGCTGTCATCTTTGGGGCTTGATCCCACTTTGGCAATTAAGAGAATGCGCAGCAGATCTGTCTCTACAAGAGGACGGAAAAGGGAGAGATCACCTGAAAGAGGTGCAGATGGCCGAGATGGTATGGATATTGATGGAGATACGCCTAGCAAAAAACAGCGACTGAGTAGATCACTGTCACGGTCTAGGTCACTGTCACGCCCACCACATGAAGTTGTGCCTGGTGAAGGTTTCAAGGATTCTGCTCAAAAGGTCAAGGCAATTAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCTCGTCGTGGAGAAGCTGATAGAGTCATACCTACTCTGAAGCCCAAGCACTTGTATTCTGGGAAGCGCTCAACTGGCAAAACTGATAGACGCTAG 2034 0.4351 MVQYNFKKITVVPNGKDFVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFYDKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRIGPSLAYLEQVRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDLQPLDGISEEDMKLVTEMKAEAMKTIVGQGGEATNDDGVLLTMSTLTEEGVIAVKNAACERLLNQRVEIKMKSKKMNDCLNRFHVALPKPRDQKERPSCIPAAVLEAKAKEAAEKEKRKTEKDLEDENGGAGVYSMNLRKSYILANDEWKEDVLPEILDGHNVYDFIDPDILHRVEELEREEGMREAEAEDDDFEIDGSELTPEQKEALAEIRKKKSLLIQQHRIKKSNAESRPTVPRKFDKDKQFTSERMGRQLSSLGLDPTLAIKRMRSRSVSTRGRKRERSPERGADGRDGMDIDGDTPSKKQRLSRSLSRSRSLSRPPHEVVPGEGFKDSAQKVKAIKLAKKSVKKRNKDARRGEADRVIPTLKPKHLYSGKRSTGKTDRR* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0547 677 PRINTS GTP1/OBG GTP-binding protein family signature 171 191 IPR006073 GO:0005525
Vra2g0547 677 PRINTS GTP1/OBG GTP-binding protein family signature 192 210 IPR006073 GO:0005525
Vra2g0547 677 PRINTS GTP1/OBG GTP-binding protein family signature 219 234 IPR006073 GO:0005525
Vra2g0547 677 Pfam NOGCT (NUC087) domain 410 463 IPR012973 -
Vra2g0547 677 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 169 355 IPR031167 GO:0005525
Vra2g0547 677 CDD NOG 169 355 - -
Vra2g0547 677 PIRSF NOG1 1 677 IPR024926 -
Vra2g0547 677 Pfam NOG1 N-terminal helical domain 6 165 IPR041623 -
Vra2g0547 677 Gene3D - 162 374 IPR027417 -
Vra2g0547 677 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 1 677 - -
Vra2g0547 677 Coils Coil 394 422 - -
Vra2g0547 677 MobiDBLite consensus disorder prediction 570 599 - -
Vra2g0547 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 312 IPR027417 -
Vra2g0547 677 Gene3D - 3 161 - -
Vra2g0547 677 MobiDBLite consensus disorder prediction 514 677 - -
Vra2g0547 677 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 1 677 - -
Vra2g0547 677 Pfam Nucleolar GTP-binding protein 1 (NOG1) 236 292 IPR010674 GO:0005525
Vra2g0547 677 MobiDBLite consensus disorder prediction 518 541 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0547 K06943 - gmx:100784033 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0547 2 4323845 4327011 Vra2g0547 2 4323845 4327011 ECH