Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0546 ATGTTGAGGGTGGCTGTGCGATGGAATCTGAAGCCAATGGCTTCTCTGCCACTAACTGCCTTTACATACCAACAGCAACAGTTCCACACTCTGAACCCTAGGCCTCCATGTCGCACCTTCAGGCTTTTCTGTCGACCTTCTTCTTCCGCCGTTGCTCACACCTCGCTTCCTCTCTCCGCCGACTTGCATAGCTACCTCCGGTGCTCCTTACCGCAGAATTCGCCCCTCCGAGTCGCCATTCTCGTTAGCGGGGGCGTTGATAGCAGCGTCGCTCTGCGGCTGCTCCACGCCGCCGGCCATTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTTTGTAGTCAGGTTGCTGTACCGTTAGAAGTTGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTACAGTAGTGGCCGAACTCCTAACCCCGACGTTCTTTGCAATACAAGAATAAAGTTTGGTGCGTTCTTGGATGCTATTGGTGGCATGGGCTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCTTGTGCTGATGGCATGAATGAGCCTTCTGTTCTAGAATTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTTTCACAATCCCAGCTGAAGCAACTTCTTTTTCCACTGGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCGACAAAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTCTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAAAGAGAAGGTATCATACTGGAGGCTGAGACAGGGGATTTCCTTGGGAAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGTCAGGGTCTACGACTACCTGGAGGTCCATGGTATGTTGTCGAGAAGGATGTTAAAAACAATGTAGTTTTTGTCTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGAGGTGCCCCCAGGCCAGACAAGTCAGCTACAGTGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCGAAGGTCACTCTGCAGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCCTTTTATGAGGGAAGAAGATGCTTAGGTTCTGGTGTGATTTTGGAGTTTTGGGATGATCATAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATGCTTGGGAATCCAGTAAAAATAAAAGTTAAACCAGATAGCCCGCAAGAAGTATGTGATCCTGCCGAGTTAGCAAGTAAAATATCGTAA 1476 0.4573 MLRVAVRWNLKPMASLPLTAFTYQQQQFHTLNPRPPCRTFRLFCRPSSSAVAHTSLPLSADLHSYLRCSLPQNSPLRVAILVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCSQVAVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADGMNEPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSEVPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGEGHSAVVRISEDDQGLAAGQFAAFYEGRRCLGSGVILEFWDDHSFPVCTKALEIARMEDKSMLGNPVKIKVKPDSPQEVCDPAELASKIS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0546 491 Gene3D HUPs 63 289 IPR014729 -
Vra2g0546 491 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 76 438 IPR004506 GO:0008033|GO:0016740
Vra2g0546 491 PANTHER - 60 470 - -
Vra2g0546 491 Pfam Aminomethyltransferase beta-barrel domain 357 437 IPR046885 -
Vra2g0546 491 Pfam tRNA methyl transferase PRC-barrel domain 285 347 IPR046884 -
Vra2g0546 491 Gene3D Translation factors 356 445 - -
Vra2g0546 491 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 77 437 IPR004506 GO:0008033|GO:0016740
Vra2g0546 491 Gene3D - 290 349 IPR023382 GO:0016783
Vra2g0546 491 Pfam tRNA methyl transferase HUP domain 77 280 - -
Vra2g0546 491 CDD tRNA_Me_trans 77 437 IPR004506 GO:0008033|GO:0016740
Vra2g0546 491 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 77 322 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0546 K21027 - gmx:100785275 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0546 2 4317836 4321881 Vra2g0546 2 4317836 4321881 ECH