LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0512	ATGGCATACAAAGAATATTTAGTGCTACCTCTCATTGCTCTACTTTCCTCATTGATTACTGTCACAGAAAGCGTAGCCCTTACTCCGCAAATAGATTTGTTGAATCGAAACAGTTTCCCAACAGGCTTCATCTTTGGTACAGCATCCTCAGCGTACCAGTATGAAGGTGCAGCCAACGAGGGTGGTAGAGGACCAAGCATTTGGGATACCTTCACTCACAAATATCCTGAAAAGATAGAGGACAGAAGCAATGGAGATGTTGCAGTTGATTCGTATCATCGCTACAAGGAAGATGTTCAGATTATGAAGGGTATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCAAGAATTCTTCCGAATGGAAAGCTGAGTGGAGGTGTAAACCAAGAAGGAATTGATTATTACAACAAACTTATCAATGAGCTACTGGCAAATGGTTTGGAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAACCTTTAGAAGATGAATATGGTGGCTTCTTAAGTCCTCGCATTGTGAAAGATTTTCAAGACTATGCAGATCTTTGCTTCAGGGAATTCGGTGATAGAGTGAAAAAGTGGATAACTTTGAATGAGCCATGGACTTTAAGCAACAAGGGTTATGCATTAGGAGCAAAGGCTCCTGGTCGATGTTCATCTTGGTGGAGTCCTAAATGCAATGGTGGTGATTCTGGAACAGAACCCTATTTGGCTACACATCACCAACTTCTTGCTCATGCAGCTGCTGTTAATGTCTACAAGACTAAGTATCAGAGATTTCAGAATGGTGTAATAGGCATAACACTGTATTCTACTTGGTACGAACCACTCTCAGATAGCAAACTAGATCGAAAGGCTGCTGAACGAGCTATGGAATTTTTGTTTGGATGGTTTATGGATCCACTTACAAGAGGAGATTATCCAGAAAGCATGCGTTCCTTGGTGAAATCACGTTTACCAAAGTTTACAAAGGAGCAATCCAAATTGCTTATTAATTCATTTGATTTTCTTGGCATAAACTACTACACTGCCAATTTTGTCTCTGATGCTCCAGAATTAAGAAATGTCAGATCCAGTTATATGACAGATCCCCTCGTAAATTATTCAGTTTTGCGGGACGGAAAACTCATCGGTGAAAATGTTGGTTCAGATTGGTTATACGTCTATCCAAAAGGATTTCGTGAAGTTTTACTATACACTAAAGAGAAATACAACAATCCTTTAATTTATATTACTGAAAATGGTGTAAATGAATATAACGATCCATCATTATCACTTGAAGAATCTCTCTTGGATATTTATAGAATTGACTATCATTATCGTCATTTTTATTATCTTCTTGATGCAATTAAGAATGGTGTAAATGTGAAAGGGTATTTTGCTTGGTCTCTTTTGGATAATTTTGAATGGGAATCAGGTTACATCATGCGATTTGGAATGAACTTTGTTGATTACAAGAATGGTTTGAAAAGATACTCAAAGCTTTCTGCGCTGTGGTTCAAGGATTTTCTCAAAATTGAAACCAAACTTCACCCTTCCATGTAA	1557	0.3789	MAYKEYLVLPLIALLSSLITVTESVALTPQIDLLNRNSFPTGFIFGTASSAYQYEGAANEGGRGPSIWDTFTHKYPEKIEDRSNGDVAVDSYHRYKEDVQIMKGMNLDAYRFSISWSRILPNGKLSGGVNQEGIDYYNKLINELLANGLEPFVTLFHWDLPQPLEDEYGGFLSPRIVKDFQDYADLCFREFGDRVKKWITLNEPWTLSNKGYALGAKAPGRCSSWWSPKCNGGDSGTEPYLATHHQLLAHAAAVNVYKTKYQRFQNGVIGITLYSTWYEPLSDSKLDRKAAERAMEFLFGWFMDPLTRGDYPESMRSLVKSRLPKFTKEQSKLLINSFDFLGINYYTANFVSDAPELRNVRSSYMTDPLVNYSVLRDGKLIGENVGSDWLYVYPKGFREVLLYTKEKYNNPLIYITENGVNEYNDPSLSLEESLLDIYRIDYHYRHFYYLLDAIKNGVNVKGYFAWSLLDNFEWESGYIMRFGMNFVDYKNGLKRYSKLSALWFKDFLKIETKLHPSM*	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g0512	518	PANTHER	GLYCOSYL HYDROLASE	1	514	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	Gene3D	Glycosidases	19	515	-	-
	Vra2g0512	518	Pfam	Glycosyl hydrolase family 1	36	509	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	1	514	-	-
	Vra2g0512	518	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	43	57	IPR033132	-
	Vra2g0512	518	ProSitePatterns	Glycosyl hydrolases family 1 active site.	413	421	IPR018120	-
	Vra2g0512	518	PRINTS	Glycosyl hydrolase family 1 signature	337	351	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	PRINTS	Glycosyl hydrolase family 1 signature	413	421	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	PRINTS	Glycosyl hydrolase family 1 signature	436	447	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	PRINTS	Glycosyl hydrolase family 1 signature	457	474	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	PRINTS	Glycosyl hydrolase family 1 signature	481	493	IPR001360	GO:0004553\|GO:0005975
	Vra2g0512	518	SUPERFAMILY	(Trans)glycosidases	28	509	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0512	Vra-Chr2	3944582	3947658	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g0512	1	508	Glycoside Hydrolase	AT5G44640	52.849	0.0	557

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0512	-		K01188	gmx:100792870	851.277