LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0510	ATGGCATACAAAGAATACGTACTGCTACCTCTCATTGCTCTACTTTCTTCATTGATTACTGTCACAGAAAGCGTAGCCCTTACTCCACAAATAGATTTGTTGAATCGAAACAGTTTCCCAACAGGCTTCATCTTTGGTACAGCATCCTCAGCGTACCAGTATGAAGGTGCAGCCAATGAGGGTGGTAGAGGACCAAGCATTTGGGATACCTTCACTCACAAATATCCCGAAAAGATAGAGGACAGAAGCAATGGAAATGTTGCAGTTGATTCGTATCATCGCTACAAGGAAGATGTTCAGATTATGAAGGATATGAATTTGGATGCGTATAGATTTTCTATATCTTGGTCTAGAATTCTTCCGAAAGGAAAGCTAAGTGGAGGTATAAACCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTGGCAAATGGTTTGGAACCATTTGTGACTCTTTTTCATTGGGATCTTCCACAATCCTTAGAAGATGAATATGGTGGCTTCTTAAGTCCTCGCAGTGTGAAAGATTTCCAGGACTATGCAGAACTTTGCTTCAAGGAATTCGGAGATAGAGTAAAAAATTGGATAACTTTGAACGAGCCATACAGTTACAGCTACAAGGGTTATGCATTAGGGACAAAGGCCCCTGGTCGATGTTCATCGTGGTGGAGTTCTAAATGCAATGGTGGTGATTCTGGAACAGAACCCTATTTGGCTACTCATCACCAACTTCTTGCTCATGCTGCTGCTGTTAATGTCTACAAGACTAAGTATCAGAGATTTCAGAATGGTGTAATAGGCATAACACTGTATTCTATTTGGTACGAGCCACTCTCAGATAGCAAACTAGATCGAAAGGCCGCTGAGCGAGCTATGGACTTTTTGTTTGGATGGTTAATGAATCCACTTACAAGAGGAGATTATCCAGAAAGCATGCGTTCCTTGGTGAAATCACGATTACCAAATTTTACAAAGGAGCAATCCAAATTGCTTATTAATTCATTTGATTTTCTTGGCATAAACTACTACACTGCCAATTTTGTCTCTGATGCACCAGAATTAAGAAATCTCAGAGGCAGTTATATGACAGATCACCTCGTAAATTATTCATTTGAGCGTGACGGAAAACTCATTGGTGAAAATGTTGTGTCGAATTGGTTGTACGTTTATCCAAAAGGAATTCGTGAAGTTTTACTACACATTAAGGAGAAATACAACAATCCTTTAATATATATTACTGAAAATGGTGTAAGTGAATACGATAATCATTCATTATCACTTGAAGAATCTCTTTTGGATATTTATAGAGTTGACTACCATTACCGTCATTTCTATTATCTTCTTGATGCAATTAAAAAAGGGGTAAATGTAAAAGGATATTTCACATGGTCTCTCTTAGACAATTTTGAATGGGATTCAGGCTACGTGATGCGATTTGGAATGAATTTTGTTGATTACAAGAATGGCCTGAAAAGATACTCAAAGCTTTCTGCCTTGTGGTTCAAGGATTTTCTCAAGAAACCAAACTTCATGATTCCATATAATTCAATTAATGCTATTTGA	1572	0.3785	MAYKEYVLLPLIALLSSLITVTESVALTPQIDLLNRNSFPTGFIFGTASSAYQYEGAANEGGRGPSIWDTFTHKYPEKIEDRSNGNVAVDSYHRYKEDVQIMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGLEPFVTLFHWDLPQSLEDEYGGFLSPRSVKDFQDYAELCFKEFGDRVKNWITLNEPYSYSYKGYALGTKAPGRCSSWWSSKCNGGDSGTEPYLATHHQLLAHAAAVNVYKTKYQRFQNGVIGITLYSIWYEPLSDSKLDRKAAERAMDFLFGWLMNPLTRGDYPESMRSLVKSRLPNFTKEQSKLLINSFDFLGINYYTANFVSDAPELRNLRGSYMTDHLVNYSFERDGKLIGENVVSNWLYVYPKGIREVLLHIKEKYNNPLIYITENGVSEYDNHSLSLEESLLDIYRVDYHYRHFYYLLDAIKKGVNVKGYFTWSLLDNFEWDSGYVMRFGMNFVDYKNGLKRYSKLSALWFKDFLKKPNFMIPYNSINAI*	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g0510	523	PANTHER	GLYCOSYL HYDROLASE	1	512	IPR001360	GO:0004553\|GO:0005975
	Vra2g0510	523	PRINTS	Glycosyl hydrolase family 1 signature	337	351	IPR001360	GO:0004553\|GO:0005975
	Vra2g0510	523	PRINTS	Glycosyl hydrolase family 1 signature	413	421	IPR001360	GO:0004553\|GO:0005975
	Vra2g0510	523	PRINTS	Glycosyl hydrolase family 1 signature	436	447	IPR001360	GO:0004553\|GO:0005975
	Vra2g0510	523	PRINTS	Glycosyl hydrolase family 1 signature	457	474	IPR001360	GO:0004553\|GO:0005975
	Vra2g0510	523	PRINTS	Glycosyl hydrolase family 1 signature	481	493	IPR001360	GO:0004553\|GO:0005975
	Vra2g0510	523	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	1	512	-	-
	Vra2g0510	523	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	43	57	IPR033132	-
	Vra2g0510	523	ProSitePatterns	Glycosyl hydrolases family 1 active site.	413	421	IPR018120	-
	Vra2g0510	523	Gene3D	Glycosidases	25	510	-	-
	Vra2g0510	523	SUPERFAMILY	(Trans)glycosidases	28	509	IPR017853	-
	Vra2g0510	523	Pfam	Glycosyl hydrolase family 1	36	510	IPR001360	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0510	Vra-Chr2	3916301	3929096	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g0510	7	523	Glycoside Hydrolase	AT5G24550	52.571	0.0	562

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0510	-		K01188	gmx:100792870	837.795