Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0509 ATGACTGTGTGCATGCAGTATGAAGGTGCAGCAAATGAGGGTGGTAAAGGGTCATGTATTTGGGACACCTTCACTCATAAATATCCAGATAAGATAAATGACAGAGGCAATGGAGATGTTGCAGTTGATTCATATCATCGCTACAAGGAAGATGTTGGGATTATGAAGCATATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCAAGAATTCTTCCAAGTGGACAATTAAGTGGGGGTATAAATCAAGAAGGAATTGACTATTACAATAAACTTATCAATGAACTGGTGGCAAATGGTTTAGAACCATTTGTGACGCTTTTCCATTGGGATCTTCCTCAATTTTTAGAAGATGAATACGGTGGCTTCTTAAGTTCTCGTATTGTTAAAGATTTCCAAGACTATGCAGAGCTTTGCTTCAAGGAATTTGGGGATAGAGTGAAAAATTGGATAACTTTGAATGAGCCATTAACTTATAGTCAACAAGGTTATGCAGTAGGAATAATGGCACCGGGACGATGTTCTTCTTGGTTGAATCCTAATTGCAATGGCGGCGATTCTGGGATAGAACCCTATTTGGTCGCACATCACCAACTTCTGGCTCATGCAGCGGTCGTTAATGTCTACAAGACCAAGTACGAGAGAATTCAAAATGGTTTGATAGGCATAACTTTGAATTTTATTTGGTGCGAGCCACTGTCGGAAGACAAACTTGATCGAGAAGCTACTGAACGAGTTATTGACTTCATGTTTGGATGGTTTATGGATCCACTAACAAGAGGAGATTATCCCAAAAACATGCATTTGTTGGTGAAATCACGATTACCAAAATTTACAAAAGAGCAATCCAAATTGCTTATTAATTCGTTTGATTTTATTGGCATAAACTACTATACCGCTAGATATGTATCTGATGCACCAGAATTAAGAAATGTCAGAAGCAGCTATATGACAGATGCCCTTGCAAATTTTTCACATATGCGTGAAGGAAAAGCTATTGGTCTAAATGTTGCTTCAGATTGGTTGTATGTTTATCCAAGAGGATTTCGAGACCTCTTATTCTACACTAAAGAGAAATACAACAATCCTTTAATTTATATCACTGAAAATGGTATAAATGATTATGATGATCCATCACTCTCACTTGAAGAATCTCTCTTAGATATTTACAGAGTTGATTATCATTATCGCCATTTATATTATCTTCAAGAAGCAATTAAGAATGGTGTAAATGTAAAAGGGTATTTTGTATGGTCACTCTTGGACAATTTTGAATGGAACTTTGGTTACACGATGCGATTTGGATTGAATTTTGTAGATTACAGAAATGGTTTGAAAAGATATTCCAAACTTTCTGCTCTGTGGTTCAAGGATTTTCTTAATATAGAATTCAAACATCAAAGTTCCTTGTAA 1416 0.3609 MTVCMQYEGAANEGGKGSCIWDTFTHKYPDKINDRGNGDVAVDSYHRYKEDVGIMKHMNLDAYRFSISWSRILPSGQLSGGINQEGIDYYNKLINELVANGLEPFVTLFHWDLPQFLEDEYGGFLSSRIVKDFQDYAELCFKEFGDRVKNWITLNEPLTYSQQGYAVGIMAPGRCSSWLNPNCNGGDSGIEPYLVAHHQLLAHAAVVNVYKTKYERIQNGLIGITLNFIWCEPLSEDKLDREATERVIDFMFGWFMDPLTRGDYPKNMHLLVKSRLPKFTKEQSKLLINSFDFIGINYYTARYVSDAPELRNVRSSYMTDALANFSHMREGKAIGLNVASDWLYVYPRGFRDLLFYTKEKYNNPLIYITENGINDYDDPSLSLEESLLDIYRVDYHYRHLYYLQEAIKNGVNVKGYFVWSLLDNFEWNFGYTMRFGLNFVDYRNGLKRYSKLSALWFKDFLNIEFKHQSSL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0509 471 ProSitePatterns Glycosyl hydrolases family 1 active site. 366 374 IPR018120 -
Vra2g0509 471 Gene3D Glycosidases 2 469 - -
Vra2g0509 471 PANTHER GLYCOSYL HYDROLASE 5 465 IPR001360 GO:0004553|GO:0005975
Vra2g0509 471 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 5 465 - -
Vra2g0509 471 SUPERFAMILY (Trans)glycosidases 5 461 IPR017853 -
Vra2g0509 471 Pfam Glycosyl hydrolase family 1 4 461 IPR001360 GO:0004553|GO:0005975
Vra2g0509 471 PRINTS Glycosyl hydrolase family 1 signature 290 304 IPR001360 GO:0004553|GO:0005975
Vra2g0509 471 PRINTS Glycosyl hydrolase family 1 signature 366 374 IPR001360 GO:0004553|GO:0005975
Vra2g0509 471 PRINTS Glycosyl hydrolase family 1 signature 389 400 IPR001360 GO:0004553|GO:0005975
Vra2g0509 471 PRINTS Glycosyl hydrolase family 1 signature 410 427 IPR001360 GO:0004553|GO:0005975
Vra2g0509 471 PRINTS Glycosyl hydrolase family 1 signature 434 446 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0509 Vra-Chr2 3908163 3912428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0509 2 462 Glycoside Hydrolase AT5G44640 54.762 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0509 - K01188 gmx:100792870 795.808