Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0474 ATGGCAGTCAACGACGCCGATCAATCTAACAGGCCTCACAGGAATCGTCAATCCGGTTCCAAAACCGCCAAGAAGAAGAGCAAGAAGAAGCAGAATCAGGATGCCGGAGGAGAGGATCAGAAAAACCAAAACCCTAAGGCATTCGCCTTTTCTTCCTCCAACAAAGCCAAAAGGTTGCAATCACGTGCTGTGGAGAAAGAGCAGCGCCGCCTTCACGCTCCCATCATTGACCGCTCCTACGGCGAACCCGCTCCATACGTCGTAGTCGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTGTTGATTAAATCTTTGGTTAAGCATTACACGAAACATAATTTGCCCGATGTTCGAGGTCCAATTACTATTGTCTCAGGAAAGCAAAGGCGGGTTCAGTTTGTGGAATGCCCTAATGATATCAATGGCATGATAGACGCGGCAAAGTTTGCAGATCTAGCGCTACTTCTCATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTAAATATATTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTCACCCATCTTGATAAATTCAAGGATGTGAAAAAGTTGAGGAAAACGAAACAAAGACTTAAACATCGATTCTGGACGGAGATATATGATGGTGCTAAACTATTTTACTTATCCGGCTTAATTCATGGAAAGTATGTTAAGCGGGAGGTGCACAATCTTGCTAGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCACCCCTATGTTTTAGTTGACCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATGATAAATGCGACAGAAAAGTCACCCTTTATGGTTATCTTAGAGGATGTAATTTGAAAAAGGGCAATAAGGTACACATAGCAGGAGTGGGTGATTATAGTTTAACTGCTATTACTGCTTTACCGGATCCTTGTCCTCTCCCATCTGCTGCAAAAAAGAAAGGGCTGCGGGATAAGGAAAAATTATTCTATGCTCCTATGTCTGGACTTGGGGATCTTTTGTATGACAAAGATGCTGTGTACATAAATATTAACGACCACCTTGTTCAATTCTCAAAAGTTGATGGTGAAGGCTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGTGAGCTTTTAGTGAAATCCCTGCAGAATACCAAATACTCTATCAACGAAAAGCTGGAGAACAGCTCTATCAGTTTTTTTGGTGAAAAGCCTAAAGTGTCATCAGAAGCTCTGACTGACTCACATGGTGAAAACAAGGATGTAGAACAGAATGAAGCTGCTATAAACACAAAGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGAGGACACCATGAAAGATAGTGAACCCTCTGATTCCGACAATGAAGATTCACCAACTAGCAATGCTTTGAATGGAGACCAAATACAAGAACATATTGAGTTTCATGATGGAAGACGAAGGCGGAGAGCGATATTTGGAAATGATAATGATCAAAGTGATGTGATGGATTCAGAAGGAGACGAGGATGCTGCTGCAAGTGATGATCTTGCGTCTTCTGATTCAGAATCTTCAGAAGAAGAGGAGGAAGATGATAATGATAATGATGACACAAATGAAAATGGCATGGGTAATGTTTCCAAGTGGAAAGAGTCTTTGGCAGAAAGAACTCTTTCACGGAAAGCTCCTAGCTTGATGCAACTTGTGTATGGGGAATCTACTAACAATTCAACCACAGCAAACTCTGAGAATGATAATAGTGGAGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAGCATGAGAGATGGATTGGATGATGATGGAATGGTCAACACTGAGGATTGTTCCAAATGCACACAATTTGTGCATCAGAGATGGGATGAGGAGATTCGTAACCGCTTTGTGTCTGGCAATTTGGCCAAAGCTGCACTCAGAAATGCATTACAAACAGCAAATGCTGAAGGGGAAAATGAAGATGTCTACGGGGACTTCGAAGATTTGGAAACAGGAGAAAAACATGAGAATAATCAGACAGATGATGTTCTTGCAGCAACAACACTTAAGGGTGATGATTTGGAAGCTGAGGAGCGGAGGCTTAAGAAACGTGCTCTCCGTGCAAAATTTGATTCTCAATTTGACAAAGACCCTGGGTCACCAGAAGAAGACACTGATAATGAAAGTGAAGGCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAACTCCAGAAACAAAGGAATATAGCTGAACTCAATGATCTTGATGAAGATACCCGATTGGAGATAGAAGGGTTCCGAACAGGGACATACCTAAGATTGGAGATTGATGATGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTATAGGGGAGGAAAATGTTGGATATATGCAGACAAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACGAGAGATCCAATCATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCCATTGAGGATAGCAATGGAAGGCATCGAATGCTTAAGTACACTCCGGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGCGTTGTAGCTGTTCAGAATTTAGCAAACAATCAGGCAACATTTAGGATTACTGCCACTGCAGTTGTGCTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGACATGTTTACTTCGGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGGACAGTCAGTGGGATTAGGGGCCAGGTCAAGAAGGCCGCAAAAGAAGAAATAGGTAATCAAGCAAAAAAGAAGGGTGGGCAAACTAAAGAAGGAATCGCTAGGTGCACTTTTGAGGATAAAATCCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAATTTTATAATCCATTGACAACTGCATTGCAGCCTCGTGAAAAGACCTGGAAAGGAATGAGGACCGTTGCAGAATTGAGAAGAGAACACAATCTTCCTGTTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAGCCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTTCAAGCAAGTCTTCCCTTTGCATCAAAACCCAAGGATATACCCAAACGAAAGAAGCCCTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCTCTTGTTCAACATCTCCAGTTAATAAATAGCGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAAAAGGAAAGAACTAGAAGCAGAGAGAGCCAAAGACGAGCAGTTGTCGAAGAAGCGCCGGAGAGAGGAAAGACGTGAGAAATACCGGGCACAAGACAAACAGAATAAGAAAATTCGAAGAGCAGAGGTTTGA 3588 0.4236 MAVNDADQSNRPHRNRQSGSKTAKKKSKKKQNQDAGGEDQKNQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHAPIIDRSYGEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANDKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLTAITALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDGEGSAMTSKGKDRDVGELLVKSLQNTKYSINEKLENSSISFFGEKPKVSSEALTDSHGENKDVEQNEAAINTKDSDGSESSDQDEEDTMKDSEPSDSDNEDSPTSNALNGDQIQEHIEFHDGRRRRRAIFGNDNDQSDVMDSEGDEDAAASDDLASSDSESSEEEEEDDNDNDDTNENGMGNVSKWKESLAERTLSRKAPSLMQLVYGESTNNSTTANSENDNSGDEESDDDFFKPIEEVKKQSMRDGLDDDGMVNTEDCSKCTQFVHQRWDEEIRNRFVSGNLAKAALRNALQTANAEGENEDVYGDFEDLETGEKHENNQTDDVLAATTLKGDDLEAEERRLKKRALRAKFDSQFDKDPGSPEEDTDNESEGKFHRGQANESSYFDKLKEEIELQKQRNIAELNDLDEDTRLEIEGFRTGTYLRLEIDDVPCEMVEYFDPYHPILVGGVGIGEENVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLANNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKKKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPREKTWKGMRTVAELRREHNLPVPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINSEKMKKRKLKEEKKRKELEAERAKDEQLSKKRRREERREKYRAQDKQNKKIRRAEV* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0474 1195 Gene3D - 86 248 IPR027417 -
Vra2g0474 1195 Coils Coil 761 781 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 724 752 - -
Vra2g0474 1195 PANTHER BNAC08G44910D PROTEIN 1 1186 - -
Vra2g0474 1195 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 706 1027 IPR007034 -
Vra2g0474 1195 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Vra2g0474 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 222 IPR027417 -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 575 592 - -
Vra2g0474 1195 Coils Coil 1183 1195 - -
Vra2g0474 1195 CDD BMS1 47 276 IPR037875 GO:0005525
Vra2g0474 1195 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 1186 IPR039761 GO:0042254
Vra2g0474 1195 MobiDBLite consensus disorder prediction 1100 1115 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 508 545 - -
Vra2g0474 1195 SMART DUF663_2 689 1026 IPR007034 -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 420 625 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 604 625 - -
Vra2g0474 1195 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Vra2g0474 1195 MobiDBLite consensus disorder prediction 484 502 - -
Vra2g0474 1195 Coils Coil 1131 1177 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 1096 1115 - -
Vra2g0474 1195 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 1 68 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 449 464 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 37 58 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 1141 1195 - -
Vra2g0474 1195 MobiDBLite consensus disorder prediction 420 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0474 Vra-Chr2 3647642 3656090 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0474 K14569 - gmx:100792176 1952.95