LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0473	ATGAACAAGCGCCAAGAAGATGAGCGTAACACAGCTGCTACCCTTGACTCCAGGTTGAATCAGACCCTCAAAAATGTTCAAGGGTTACTCAAGGGTCGCAGCATTCCCGGTAAAATATTATTGAGTCGTAGGTCAGATCCTCCGGATAGCTCAAACTCAAAGATGTCAAATAACCCAAACTCAAAGATATCCTCACCAAGTTACAAGAGGAGCTTTTCTCACAATGATGCTGGTCCAAGTGATCATACATCTGAGGCAGTAGAGGAGGAATTTCCGAGTACAAACAAACCAATTAGTATTGCCAATGACAGTAAGCTAAAAGTGTCGACTTCCTTTGGAAGCAACCAGCCTGAAGAAATCCGCAAGTCTATCTTGGGTGCTAGATCTACGGACTCTGCAAGAGTTATGAAGTTCACTAAGGTCCTCTCCGAGACAGTGGTTATATTAGACAAGCTGCGTGAATTAGCATGGAGTGGTGTTCCAGACAATATACGTCCTAAAGTGTGGAGACTTTTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATATCTCAGTATTATGATATTCCAGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAAACGCAAGTTCAGAAATCATTAGAGCGTATTCTTTATGCATGGGCCATTCGCCATCCTGCAAGTGGATATGTTCAGGGGATAAACGATCTTGTTACACCGTTCTTGGTTGTTTTCTTATCAGAGTATTTTGAAGGGGATATAGATAATTGGTCAATGTCTGATTTATCTCCAGATACAATCTCTAATGTAGAGGCAGACTGTTACTGCTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCACGAGGATTGATGAGCCTGTTTCGCGGCACTTGGAGGATCAGGGACTTGATTTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATCACGCGCCTTTGGGATACATATTTAGCTGAAGGAGATGACTTACCTGACTTCCTAATATATATATTTGCCAGCTTCCTTCTAACGTGGTCTGACAAGCTCCAGAAATTTGATTTCCAAGAATTGGTAATGTTCCTTCAGAACCTCCCGACAGAGAATTGGACTCACCAGGAGCTTGAGATGGTGCTTTCACGAGCATTTATGTGGCACACCATGTTCAACAACTCTCCCAGCCATTTAATTAGCTAA	1371	0.4274	MNKRQEDERNTAATLDSRLNQTLKNVQGLLKGRSIPGKILLSRRSDPPDSSNSKMSNNPNSKISSPSYKRSFSHNDAGPSDHTSEAVEEEFPSTNKPISIANDSKLKVSTSFGSNQPEEIRKSILGARSTDSARVMKFTKVLSETVVILDKLRELAWSGVPDNIRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQTQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDIDNWSMSDLSPDTISNVEADCYCCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVTRIDEPVSRHLEDQGLDFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDDLPDFLIYIFASFLLTWSDKLQKFDFQELVMFLQNLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLIS*	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g0473	456	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	3	453	-	-
	Vra2g0473	456	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	196	320	-	-
	Vra2g0473	456	SMART	tbc_4	156	412	IPR000195	-
	Vra2g0473	456	MobiDBLite	consensus disorder prediction	27	99	-	-
	Vra2g0473	456	MobiDBLite	consensus disorder prediction	45	80	-	-
	Vra2g0473	456	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	136	346	IPR035969	-
	Vra2g0473	456	ProSiteProfiles	TBC/rab GAP domain profile.	159	386	IPR000195	-
	Vra2g0473	456	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	322	444	IPR035969	-
	Vra2g0473	456	Gene3D	-	133	185	-	-
	Vra2g0473	456	Pfam	Rab-GTPase-TBC domain	162	408	IPR000195	-
	Vra2g0473	456	Gene3D	-	321	456	-	-
	Vra2g0473	456	PANTHER	GTPASE-ACTIVATING PROTEIN GYP1-LIKE	3	453	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0473	Vra-Chr2	3638064	3645710	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0473	K20360		-	gmx:100819281	792.727