Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0470 ATGTTGCAGGTAGCTATGGTGAGCAAGGTTGCAGGGTTTGTGACAACCTTATTCATGATGGTGATGATGACGATGGTGCCAAAAACCGAGAGCTCCCATATAGATAAAATCGTCACACCACAATTCTTCGACATGATAATCAACCAGGCCGATGGTGATTGTCCAGGAAAGAACTTCTACTCACGTGATGCTTTCCTCAAAGCTCACAATTCCTACCATCGATTTGGTAGTCTTAGTAGTGACGATGATTCCAAACGTGAAGTTGCAGCTGCTTTTGCTCATTTCACCCATGAAACTGGACATTTTTGCTACATAGAAGAGATTGGAGGGGCATCAAGGGACTACTGTGATGAAAGCAACATTGAGTTTCCATGTGCACCTAACAAAGGGTACTATGGTCGTGGACCTATCCAACTGTCATGGAACTTCAACTATGGACCAGCAGGACAGAACATTGGTTTTGATGGGTTGAATGCTCCAGAGACAGTGGCCAATGATCCTGTTGTGTCCTTCAAGACAGCATTGTGGTACTGGATGGAGTTTGTTCGCCCTGTCATTCACCTGGGCTTTGGTGCAACCATTAAAGCCATCAATGGCTACCTTGAATGTAATCAAGGAAACCCTGACACTGTCAATGCTCGTGTTTATTATTACACCCAGTATTGCTCTCAACTTGGTGTTGCTCCTGGTGACAATCTTACTTGCTCAGAGATTTCAATACTGAGTGAGTATGGTCTAAATTGCCAAAGTTGTGTATTTATAGTAATCACACAGTTCGATAGAATTCTCCATCAGGCGATGTGGAACAAGAAGGTGCAAAACATGAACACTGGAGTAACGAGAGTGATGGTGAGTTTCTTAGCGTTGATGCTAATAGGGTGCCAACAAGGTGCTTGCTATGGCACTGACTCAGCCAACCATGTTTCTGTGGCTGACATTGTCACAACTGAATTCTTCAACAATATATTCGACGAAGGTGATGACGATGCTGATTGTCCGGGGAAGAATTTCTACTCTCGACAAGCCTTCCTGCATGCTCTCAATTCCTACAAACAGTTTGGTAGGAGTGGTTCTGTAGATGACTCCAAACGTGAAATTGCTGCTGCTTTTGCTCATTTCACCCATGAAACTCAACATTTTTGCTACATAGAAGAGAGTGAAGGTGAATCAAAGGACTATTGTGATGAAAGCAAGAGTGATGAGTATCCGTGTGCGGCTGACAAGGAGTACTATGGTCGTGGGCCGATTCAACTGAAATGGAACTACAACTATGGAGCAGCAGGAGAGAGCATTGGTTTTGATGGGTTGAAGGCACCGGAGACAGTGGGGAGTGACCCAGTGGTGTCGTTCAAGACAGCACTGTGGTACTGGACAGAAAATGTGAGCCCTGTGATGGAGCAAGGATTTGGTGAAACCATTAGAGCTATGAAAGGTGAAGTTGAATGTGATGGAGGAAACCCTGATGCTGTTCAGGCTCGTGTTGATTACTACACACAATACTGTTCGCAGCTTGGTGTTGCTCCTGGTGATAACCTCACTTGCTAA 1545 0.4472 MLQVAMVSKVAGFVTTLFMMVMMTMVPKTESSHIDKIVTPQFFDMIINQADGDCPGKNFYSRDAFLKAHNSYHRFGSLSSDDDSKREVAAAFAHFTHETGHFCYIEEIGGASRDYCDESNIEFPCAPNKGYYGRGPIQLSWNFNYGPAGQNIGFDGLNAPETVANDPVVSFKTALWYWMEFVRPVIHLGFGATIKAINGYLECNQGNPDTVNARVYYYTQYCSQLGVAPGDNLTCSEISILSEYGLNCQSCVFIVITQFDRILHQAMWNKKVQNMNTGVTRVMVSFLALMLIGCQQGACYGTDSANHVSVADIVTTEFFNNIFDEGDDDADCPGKNFYSRQAFLHALNSYKQFGRSGSVDDSKREIAAAFAHFTHETQHFCYIEESEGESKDYCDESKSDEYPCAADKEYYGRGPIQLKWNYNYGAAGESIGFDGLKAPETVGSDPVVSFKTALWYWTENVSPVMEQGFGETIRAMKGEVECDGGNPDAVQARVDYYTQYCSQLGVAPGDNLTC* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0470 514 Gene3D Endochitinase, domain 2 387 443 - -
Vra2g0470 514 CDD chitinase_GH19 314 514 - -
Vra2g0470 514 PANTHER CHITINASE-RELATED 284 514 - -
Vra2g0470 514 PANTHER CHITINASE-RELATED 15 235 - -
Vra2g0470 514 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra2g0470 514 CDD chitinase_GH19 38 235 - -
Vra2g0470 514 Pfam Chitinase class I 313 462 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra2g0470 514 Pfam Chitinase class I 466 514 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra2g0470 514 Pfam Chitinase class I 38 180 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra2g0470 514 Pfam Chitinase class I 189 235 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra2g0470 514 Gene3D - 33 235 - -
Vra2g0470 514 Gene3D - 308 514 - -
Vra2g0470 514 SUPERFAMILY Lysozyme-like 34 237 IPR023346 -
Vra2g0470 514 ProSitePatterns Chitinases family 19 signature 1. 332 354 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra2g0470 514 SUPERFAMILY Lysozyme-like 309 514 IPR023346 -
Vra2g0470 514 Gene3D Endochitinase, domain 2 108 163 - -
Vra2g0470 514 PANTHER ENDOCHITINASE EP3-LIKE 284 514 - -
Vra2g0470 514 PANTHER ENDOCHITINASE EP3-LIKE 15 235 - -
Vra2g0470 514 ProSitePatterns Chitinases family 19 signature 2. 169 179 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0470 Vra-Chr2 3622191 3626810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0470 292 514 Glycoside Hydrolase AT3G54420 66.816 1.11e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0470 K01183 - atr:18448760 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0470 2 3622191 3626810 Vra2g0470 2 3622191 3626810 ECH