Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0469 ATGATGTCTACCACACTCTCAGTATCGTTCTCTTGTAATCCCAAAAACCCAAAATCGCTTTGCTTTCTTCCTTTGCAGGACTTTGCCAACACTTCCACTCTCAGGCTTTTGCCAACACTTCCGCTTCGTTGTTCTCAGGAAAGAAGCCTTGCACCACCCCCAACTGGGCTGGATGAAAACATTGGGGGTTTTTCAGCCTCAAACGACTGCGTTTTGAGCAGCAATACACCGGTGCTTCGGCAAAATGGCCTACCTCCTCTGGTCAGTGCATTGAAAGCTTCTGCTGAGCAAAATGTTGCCAGTTTTCACTTTCCTGGACATAACAGAGGGCGTGCTGCTCCTGCTTCCTTGACTCGGCTCATTGGAACGAGACCCTATTTGCATGATTTACCTGAGCTTCCAGAGCTTGACAACCTCTTTTGTCCTCAGGGGCCCATATTAGAAGCACAGATTGAAGCGGCCAAACTGTTTGGATCATCACATACATGGTTTCTGGTTGGAGGTACTACTTGTGGGATTCAGGCAGCCATTATGGCTACCTGTTCCCCCGGAGAATTTCTGATTCTTCCAAGGAATTCCCATATATCAGCTATATCTGCTATGGTATTGTCCGGTGCAGTGCCTAAGTATATTGTTCCCGACTATGAGAATGATTGGGACATTGCTGGTGGTGTCACTCCATTACAGGTATTGAAAGCCATCCGGGGATTAGAAATGGAAGGGAAAAAAGCGGCAGCGGTTTTCATCACCTCGCCTACTTATCATGGTATTTGCAGTGATGTAAGCAGGATTTCTGAGCTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCACGGTGCACATTTTGGATTCCATTCTGAACTACCTAACTCAGCCCTCCAGCAAGGGGCTGATCTGACTGTACAATCAACTCACAAAGTTCTATGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAAGAAATATTGTAGATAAGGAAAAAATTGATAGATGTCTCCAAACTCTTCAAACCACAAGCCCTAGCTATCTGCTTTTGGCATCCCTGGATGCTGCCAGAGCTCAACTTAGTGAACGCCATGATGTTGTATTCAACCAAGCAATTGCATTAGCTTATGAAGCAAAGTTCACGCTAAAACAAATTGCTGGTATATCAGTGCTTGAGAATTCAAGCTTTTCAACGTTTCCTGCAATTGATCCATTGCGTCTCACTGTGGGCTTTTGGAAGCTTGGTCTATCAGGTTACGAAGCTGACGAAATCTTATACAGAGATTATGGTGTTATCTGCGAACTTGTTGGGAACAAATCTATTACTTACGCATTTAATCTCGGGACTTGTAGGGACCATGTCCAAAGACTTCTCTTGGGAATAAAGCATTTGGCTGCAACATATTCTTCCATTCAGCAACCTGAAGAGAAAGTGTGTGATGTTCATGCACCCTTTGATGATATAATAATGAGTTTAATCCCCAGAGATGCCTTTTTTGCTAGTAAAAGAAAAGTAACAATAAGGGAGAGCATTGGTGAGGTTTCAGGGGAGCTTGTATGTCCATATCCTCCGGGCATACCAGTATTGATCCCTGGTGAGGTTATTACCGAAAGAGCTGTTGATTATCTTCTACATGTTAGGAGTAAAGGTGCTGATATTAGTGGGGCATCTGATCCCTTACTTTCTTCAGTAGTTGTCTGCAACATAAAGTAA 1710 0.438 MMSTTLSVSFSCNPKNPKSLCFLPLQDFANTSTLRLLPTLPLRCSQERSLAPPPTGLDENIGGFSASNDCVLSSNTPVLRQNGLPPLVSALKASAEQNVASFHFPGHNRGRAAPASLTRLIGTRPYLHDLPELPELDNLFCPQGPILEAQIEAAKLFGSSHTWFLVGGTTCGIQAAIMATCSPGEFLILPRNSHISAISAMVLSGAVPKYIVPDYENDWDIAGGVTPLQVLKAIRGLEMEGKKAAAVFITSPTYHGICSDVSRISELCHSRKIPLIVDEAHGAHFGFHSELPNSALQQGADLTVQSTHKVLCSLTQSSMLHMSRNIVDKEKIDRCLQTLQTTSPSYLLLASLDAARAQLSERHDVVFNQAIALAYEAKFTLKQIAGISVLENSSFSTFPAIDPLRLTVGFWKLGLSGYEADEILYRDYGVICELVGNKSITYAFNLGTCRDHVQRLLLGIKHLAATYSSIQQPEEKVCDVHAPFDDIIMSLIPRDAFFASKRKVTIRESIGEVSGELVCPYPPGIPVLIPGEVITERAVDYLLHVRSKGADISGASDPLLSSVVVCNIK* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0469 569 PANTHER ARGININE DECARBOXYLASE 68 567 - -
Vra2g0469 569 Pfam Orn/Lys/Arg decarboxylase, major domain 85 387 IPR000310 GO:0003824
Vra2g0469 569 Gene3D - 85 365 IPR015421 GO:0003824
Vra2g0469 569 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 502 548 IPR008286 GO:0003824
Vra2g0469 569 Gene3D - 466 565 - -
Vra2g0469 569 PANTHER ARGININE DECARBOXYLASE 68 567 - -
Vra2g0469 569 SUPERFAMILY Ornithine decarboxylase C-terminal domain 423 566 IPR036633 GO:0003824
Vra2g0469 569 CDD Orn_deC_like 86 383 IPR000310 GO:0003824
Vra2g0469 569 SUPERFAMILY PLP-dependent transferases 85 463 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0469 Vra-Chr2 3617805 3620992 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0469 - - gmx:100819143 947.577