Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0468 ATGATGCCTCACCAAAACGGGATTCCCCCACTAGTCACTGCAGTAAAATCTTCAGCCGAAAAAAATGCAGCGAGTTTTCACTTTCCTGGACACAACAGAGGGCATGCTGCACCTGCTTCCATGACTGCGCTCATTGGAAGAAAACCCTTTGTTCATGACTTGCCTGTGCTTCGTGAGCTTGGCAATCTCTTTTGTCCCTACGGTCCCATATTAGAAGCACAGCTCGAAGCAGCAAAACTCTTTGGATCCTCGTACACATGGTTTCTTGTCGGAGGTACAACTTCTGGAATCCAGGCCGCCATAATGGCAACATGTTCTCCTGGGGAACTTCTCATTCTTCCAAGGAATTCTCATATATCAGCTATATCTGCTGTGGTATTATCTGGTGCAGTGCCTAAGTACATCATTCCTCACATTCTCAATGATTGGGACATTGCTGCTGCTGTCACTCCATCTCAGGTATTTCAAGCTATCCGGGAAGTAGAAATGGAAGGGAAAAAAGCAGCAGCAGTGTTCATCACTTCACCAACTTATCATGGTCTTTGCAGTGACTTGAGCAGGATTTCTGAGCTCTGTCACTCTCATAAAATCCCTTTGATTGTTGATGAAGCTCATGGCGCACATTTTGGATTTCATTCTAAACTGCCTAAGTCAGCTCTCCAGCAAGGTGCCGATCTCATCGTGCAGTCCACTCACAAAGTTTTATGCTCTCTTACACAGTCATCCATGCTGCACATGTCAGGCAACATTGTAGACAAGGACAGAGTTTCTGCATGTCTCCGAACTCTCCAAACCACAAGCCCTAGTTTTCTGCTTCTGACATCCCTTGATGCCGCTAGAGCTCAACTCAGTGAGAACCCTGATACTGTATTCAACCAAGCAATTGCATTAGCCGATGAAGCAAAGCGTGTGCTAAAACAAATCCCTGGCATCTCAGTACTTGATAATTCAAGCTTCCCAGCCTCTCCTGCAGTTGATCCATTGCGTCTCACTGTAGGGTTTTGGAATCTTGGTTTATCAGGTTCCGAAGGAGATGAAATCTTATACAAGGATTATGAAGTCATATGTGAACTCGTTGGGAATAGATCAATAACTTATGTACTTAATCTTGGAACTTGTAGGGAGCATGTCGACAGGCTTGTGTTGGGTATTAAGCGTTTGGCTGCAACATATGCTTCCATTGGAAAAGCAGAGAAGAAAGTGGTGAATGTTCATGCACCCTTTGATGATATAATAATGAGTATGATCCCTAGAGATGCATTTTTTGCAAGTAAAAGAAAAGTGGCAATAAGAGAGAGCATTGGTGAGGTTGCAGGGGAGATTATATGTCCCTACCCTCCTGGTGTACCATTATTGATCCCTGGTGAGGTTGTAACTGAAAAAATTGTTGATTATCTGCTTCTTGTTAGGAGTAAAGGTGCTGAAGTTAATGGAGCATCTGACTCCTCGCTTTCTTCGATAGTTGTTTGTGGTAAATTAGCAGCTGGGAAGGAGCACCCTTAA 1503 0.4405 MMPHQNGIPPLVTAVKSSAEKNAASFHFPGHNRGHAAPASMTALIGRKPFVHDLPVLRELGNLFCPYGPILEAQLEAAKLFGSSYTWFLVGGTTSGIQAAIMATCSPGELLILPRNSHISAISAVVLSGAVPKYIIPHILNDWDIAAAVTPSQVFQAIREVEMEGKKAAAVFITSPTYHGLCSDLSRISELCHSHKIPLIVDEAHGAHFGFHSKLPKSALQQGADLIVQSTHKVLCSLTQSSMLHMSGNIVDKDRVSACLRTLQTTSPSFLLLTSLDAARAQLSENPDTVFNQAIALADEAKRVLKQIPGISVLDNSSFPASPAVDPLRLTVGFWNLGLSGSEGDEILYKDYEVICELVGNRSITYVLNLGTCREHVDRLVLGIKRLAATYASIGKAEKKVVNVHAPFDDIIMSMIPRDAFFASKRKVAIRESIGEVAGEIICPYPPGVPLLIPGEVVTEKIVDYLLLVRSKGAEVNGASDSSLSSIVVCGKLAAGKEHP* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0468 500 PANTHER ARGININE DECARBOXYLASE 5 490 - -
Vra2g0468 500 SUPERFAMILY Ornithine decarboxylase C-terminal domain 347 491 IPR036633 GO:0003824
Vra2g0468 500 SUPERFAMILY PLP-dependent transferases 9 387 IPR015424 -
Vra2g0468 500 CDD Orn_deC_like 10 307 IPR000310 GO:0003824
Vra2g0468 500 PANTHER ARGININE DECARBOXYLASE 5 490 - -
Vra2g0468 500 Gene3D - 9 289 IPR015421 GO:0003824
Vra2g0468 500 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 413 474 IPR008286 GO:0003824
Vra2g0468 500 Pfam Orn/Lys/Arg decarboxylase, major domain 9 308 IPR000310 GO:0003824
Vra2g0468 500 Gene3D - 392 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0468 Vra-Chr2 3613830 3616270 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0468 - - gmx:100819143 776.933