Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0459 ATGACTAACGCACAAGGCGGCTCCATGTTGGTGGAGCCAAACACACACAAGCCCTTACACAAACCCAAATTTGGAGCTTTGTTGCACTCCGAACCCATCAACAACGATGCCGATAACTTCCAATATAACCACCGCACCAACGCCGCACACATGAACTACACCGATAGTAGCAATGATGTCTCTCCCTACTCTATGTCCCCATTGAACTACCCAAACCATTCTTCATCTCCTCTCAACAAGTCTCCATGGCTTTTACCCGCCTCACCCGCTATAAACCCCTTCCTCCACCACCACCAAGACCACCTCCCCGGCAACAGCCTCATCGGATCCCTCGTTCGCGAAGAGGGTCACATATATTCCTTGGCCGTTTCCGGTGACTTGTTATACACCGGCTCCGACAGCAAGAATATAAGAGTCTGGAAGCATCTCAAGGACTACACCGGCTTCAAATCAAGCAGTGGATTAGTTAAAACCATAATAATCGCCGGCGGAAAAATCTTCACCGGCCACCAAGACGGTAAGATCAGAGTGTGGAAGGTTTCCTCCAAGAATCCAAGCAAGCATAAACGCATCGGGAGCTTGCCAACGTTCAAAGATTACATGAAGTGTTCCATGAACCCAAAGAATTACGTGGAGGTTCGCCGCAACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGTCTCTCAGTCTGGACAAGGAGGAAGGCTTGCTGTACTCCGGGTCGTGGGACAAGACGGTCAAGGTGTGGCGCGTGGCGGATTTCAAGTGCTTGGAGTCGATCAACGCGCACGACGATGCGGTGAACGCGGTGGTGACGATGCCCGGAGGGTGCGTGTTGACGGGGTCAGCGGATGGGACGGTGAAGATGTGGAGGAGGGTGAGCGACGAGAAGGGGAAGAAGCCGAAGCATCTGTTGGGCAGGGTTTTGCTGAAGCAGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGTGCGGGCACGGTGCTTTATTGCGGTTCCTCCGATGGTATGGTGAACTTCTGGGAGAATGACGAGAAGTGTGGGTTCACGCACGGTGGCGTTTTGAGGGGTCACAAGCAAGCCGTGCTCTGCCTGGCCGTGGCGGGGAACCTTCTCTTCAGTGGGTCTGCTGATAAGAAAGTGTGCGTATGGAAGCGCGACGAGAGTGGGTTCCACACCTGCCATTCGGTTCTGACGGGTCACGTGGGTCCTGTTAAATGTATCGCCGTGGAGGAGGATCAGGCGCAACCGGAGAAGCCTCGCAACAAGAAAGATGATCAGCGGTGGATTGTGTATACGGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCCGAACAGGCGCCGGAGTTGAGCTCGTTCCAAAGCTGGGCCAGTCCTGGTCCATTTACCACATAA 1407 0.5451 MTNAQGGSMLVEPNTHKPLHKPKFGALLHSEPINNDADNFQYNHRTNAAHMNYTDSSNDVSPYSMSPLNYPNHSSSPLNKSPWLLPASPAINPFLHHHQDHLPGNSLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDYTGFKSSSGLVKTIIIAGGKIFTGHQDGKIRVWKVSSKNPSKHKRIGSLPTFKDYMKCSMNPKNYVEVRRNRNAVKVKHFDAVSSLSLDKEEGLLYSGSWDKTVKVWRVADFKCLESINAHDDAVNAVVTMPGGCVLTGSADGTVKMWRRVSDEKGKKPKHLLGRVLLKQENAVTALAVNRAGTVLYCGSSDGMVNFWENDEKCGFTHGGVLRGHKQAVLCLAVAGNLLFSGSADKKVCVWKRDESGFHTCHSVLTGHVGPVKCIAVEEDQAQPEKPRNKKDDQRWIVYTGSLDKSVKVWRVSEQAPELSSFQSWASPGPFTT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0459 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 387 IPR001680 GO:0005515
Vra2g0459 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 293 IPR001680 GO:0005515
Vra2g0459 468 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 461 - -
Vra2g0459 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 293 - -
Vra2g0459 468 SMART WD40_4 218 253 IPR001680 GO:0005515
Vra2g0459 468 SMART WD40_4 305 344 IPR001680 GO:0005515
Vra2g0459 468 SMART WD40_4 104 141 IPR001680 GO:0005515
Vra2g0459 468 SMART WD40_4 142 179 IPR001680 GO:0005515
Vra2g0459 468 SMART WD40_4 256 294 IPR001680 GO:0005515
Vra2g0459 468 SMART WD40_4 350 387 IPR001680 GO:0005515
Vra2g0459 468 SMART WD40_4 393 446 IPR001680 GO:0005515
Vra2g0459 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 254 - -
Vra2g0459 468 CDD WD40 115 446 - -
Vra2g0459 468 Gene3D - 219 350 IPR015943 GO:0005515
Vra2g0459 468 SUPERFAMILY WD40 repeat-like 106 452 IPR036322 GO:0005515
Vra2g0459 468 Gene3D - 351 467 IPR015943 GO:0005515
Vra2g0459 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 344 IPR001680 GO:0005515
Vra2g0459 468 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 461 IPR045182 -
Vra2g0459 468 Pfam WD domain, G-beta repeat 317 343 IPR001680 GO:0005515
Vra2g0459 468 Pfam WD domain, G-beta repeat 224 252 IPR001680 GO:0005515
Vra2g0459 468 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Vra2g0459 468 Pfam WD domain, G-beta repeat 396 445 IPR001680 GO:0005515
Vra2g0459 468 Pfam WD domain, G-beta repeat 355 387 IPR001680 GO:0005515
Vra2g0459 468 Pfam WD domain, G-beta repeat 115 141 IPR001680 GO:0005515
Vra2g0459 468 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Vra2g0459 468 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Vra2g0459 468 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Vra2g0459 468 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0459 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Vra2g0459 468 Gene3D - 100 218 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0459 Vra-Chr2 3548833 3550480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0459 166 387 Acyl Lipid Metabolism Gene Families AT3G18860 25.514 1.23e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0459 - - gmx:100807706 718.768