Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0451 ATGGCGATTCAAGTCCTTGAACAGTTTTCGCAAACCTTGAGACCCAAAGCATGGGCTCTGTTTTTTTCTTCTTCTTGTTCAAACCATGACTCCCAGAGTTTAGTAACAAAAGTGGTTACAATCCTTATCAATCACCGTTCCAAGTCACGGTGGAGCAATCTCCGTTCGGCGTGTCCCAACGGCATAGACCCCCATGAGTTTTCCCAAATTATCCTTCACCTCAAGAACAAACCCCAACTTGCTCTTCGCTTCTTCCTATGGACCAAATCCAAATCCCTCTGCCACCATAACCTCGCCTCTTACGCTTCCATCGTCCACCTCCTTGCGCGTGCGCGCCTCTCCTCACACGCTTACCACCTCATCCGAACGGCACTTCGCGTTTCCGACCAGACCCACGACCTAAATTGTCGTTTTGCCTCGCCGTCTCTGAACCTTTTCGAAACCCTCGTTAAGACCTATCGGGATTCTGGCTCCGCTCCCTTCGTCTTCGATTTGTTGATCAAGGCGTGTTTGGATTCCAGAAAGGTTGACCCTTCTATTGAGATCGTTAGAATGTTGCTCTCTCGCGGGATTAGCCCTAAAGTTAGCACCTTGAATTCTTTGATTACTGGGGTTTGTAGAAGTCGAGGGGTGGATGCAGGGTATGCAATTTACCGCGAGTTCTTTCGGTTGGATGAGGAAAAAAATGAAATTTCGAGAAGGGGTTGTGGTTTAAGAGTCACACCCAACGTCCATACTTATAATGAGTTGATGCTGTGCTGTTACCAAGATGGTTTAGTGGAAAGGATAGAGGAAATTTGGAAGGAAATGAGAAGTAACTGTAAACCCAATGCTTATAGCTACAGTGTGTTGATGGCCGCTTTTTGTGAGGAAGGGAAAATGGGGTATGCAGAAAAGTTGTGGGAAGAAATGAGAAATGAGAAAATGGAGCCTGATGTTGTTAGTTATAATACTATTATTGGTGGGTTTTGCAAGATTGGAGATGTTGTTAGGGCTGAAGAGTTTTTCAGGGAAATGGAATTGGCGAGTGTTGAGGCCACTGCTTCAACTTACGAGCATCTTGTGAAGGGATATTTCAGTGTTGGGGATGTTGATTCAGTTGTTCTGGTTTATGAGGATATGTCTAGGAGGGATTTAAGGCCTGATTCTTCAACCCTTGACATGATGGTTAGTTTGCTTTGCGATAAGGGTAGGGTTCAGGAAGCTCTGGAGTTTGTGAGGCGCGCAGTTAGTAAATTTGATTTAATTCCAAGGGAAAAGAGTTATGAGGTGTTGATAAAGGGACTGTGTTTTGAGGGGAGAATGGAAGAAGCGTTGAAACTTCAGGCAGAGATGGTAGGAAAAGGTTTCCAACCGAAATCTGAAGTTTATGGTGCTTTCGTTGATGGATACATTCGACAAGGGAACGAAGAAATGGCAAGAGCTTTGAGGAAAGAAATGCTCCAAAATGGGATACAGAGCTAA 1464 0.4488 MAIQVLEQFSQTLRPKAWALFFSSSCSNHDSQSLVTKVVTILINHRSKSRWSNLRSACPNGIDPHEFSQIILHLKNKPQLALRFFLWTKSKSLCHHNLASYASIVHLLARARLSSHAYHLIRTALRVSDQTHDLNCRFASPSLNLFETLVKTYRDSGSAPFVFDLLIKACLDSRKVDPSIEIVRMLLSRGISPKVSTLNSLITGVCRSRGVDAGYAIYREFFRLDEEKNEISRRGCGLRVTPNVHTYNELMLCCYQDGLVERIEEIWKEMRSNCKPNAYSYSVLMAAFCEEGKMGYAEKLWEEMRNEKMEPDVVSYNTIIGGFCKIGDVVRAEEFFREMELASVEATASTYEHLVKGYFSVGDVDSVVLVYEDMSRRDLRPDSSTLDMMVSLLCDKGRVQEALEFVRRAVSKFDLIPREKSYEVLIKGLCFEGRMEEALKLQAEMVGKGFQPKSEVYGAFVDGYIRQGNEEMARALRKEMLQNGIQS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vra2g0451 487 Pfam PPR repeat family 242 289 IPR002885 -
Vra2g0451 487 Pfam PPR repeat family 349 394 IPR002885 -
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 417 IPR002885 -
Vra2g0451 487 Pfam PPR repeat 309 340 IPR002885 -
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vra2g0451 487 TIGRFAM PPR: pentatricopeptide repeat domain 314 345 IPR002885 -
Vra2g0451 487 TIGRFAM PPR: pentatricopeptide repeat domain 456 485 IPR002885 -
Vra2g0451 487 TIGRFAM PPR: pentatricopeptide repeat domain 350 383 IPR002885 -
Vra2g0451 487 TIGRFAM PPR: pentatricopeptide repeat domain 245 277 IPR002885 -
Vra2g0451 487 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Vra2g0451 487 TIGRFAM PPR: pentatricopeptide repeat domain 421 452 IPR002885 -
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vra2g0451 487 Gene3D Tetratricopeptide repeat domain 391 487 IPR011990 GO:0005515
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Vra2g0451 487 Gene3D Tetratricopeptide repeat domain 228 376 IPR011990 GO:0005515
Vra2g0451 487 Gene3D Tetratricopeptide repeat domain 68 224 IPR011990 GO:0005515
Vra2g0451 487 Pfam PPR repeat 456 485 IPR002885 -
Vra2g0451 487 Pfam PPR repeat 421 450 IPR002885 -
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vra2g0451 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Vra2g0451 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 5 484 - -
Vra2g0451 487 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 484 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0451 70 487 Glycosyltransferase AT1G05670 26.906 6.63e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0451 - - gmx:100809831 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0451 2 3494488 3495951 Vra2g0451 2 3494488 3495951 ECH