Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0444 ATGGTAATTAGGCCCCTGAGAGTGAGAGATGCTCTAGTATACCGTGACCATGTCCAGGCAATAAAATCCGGTTTGGTATCAAGCATTTTCACTTGTAATCAACTCATTCATCTTTATTCCAACCATGGCCTTTTGGAAGAGGCCCACAAACTGTTCGATGAAATTCCCCACCCCAATGTGTTCTCTTGGAATGCCATAATTATGGCTTACATAAAAGCAAACAACTTGCCTCACGCACAAGCTCTTTTTGACTCAGCCTCTCACAGAGATTTGGTTTCTTATAATTCCATGTTGTCGGCTTATGTTGGCTCCCATGGGTACGAGACTGAGGCACTTGATTTGTTTATTAGAATGCAATCTGCACGTGACAGAATTGGGATTGATGAGTTCACTCTCACGACCATGCTTAACCTTGCTGCCAAACTACGTGTGCTGCTTTATGGGAAGCAGATGCATTCATATATGGTGAAAACTGCAAATGATTTAAGTAAGTTTGCTTTGAGTTCTCTCATAGACATGTACTCTAAATGTGGCTCGTTTCAAGATGCATGTACTACATTTAGCGGTTGTGACGGGATGGTGGACTTGATTTCAAAGAATGCAATGGTTGCAGCTTGTTGTAGGGAAAAAAAGATGACCATGGCCCTAAATATATTTTGGAAAAATCCTGAATTAAATGATACTGTGTCTTGGAACACATTAATTGCAGGGTACGCCCAGAACGGCTATGTGGAGAAATCACTTACCTTGTTTGTTGTGATGACTGAAAATGGTATTGGTTTCAACGAACACACTTTAGCAAGTGTTTTGAGTGCTTGCACAGGTATAAAATGTTTAAAGCTTGGCAAATCTGTTCATGCTCGGGTTTTGAAAAATGGTTGCAGTTCAAATAAATTTATTAGCAGTGGCATTATCGACTTCTACTCTAAGTGTGGGAATATCAGATATGCAGAGTTAGTCAATGCAGAAATTGAGATTAAAAGTCCATTTTCAGTTGCTTCATTGATAGCAGGCTACTCATCTCAAGGTAACATGAAAGAAGCCCAAAGGCTTTTTGATTCACTCTTGGAAAGAAACTCTGTTGTATGGACAGCTCTATGTTCTGGCTATGTCAAATCACAACAATGTGAGGAAGTCTTCAGACTTTTCAAAGAGTTTTTAACTAAAGAAGCAGTAGTCCCTGATACAGCGATCATTATCAGTGTGCTTGGCGCCTGTGCCATACAAGCTACCCTTAGTTTGGGAAAGGAAAGTCATGCTTACATCTTGAGAATGAGACTTCATGTGGATAAGAAATTACTGAGTGCTTTGATTGATATGTATTCAAAATGTGGAAATGTTACTTATGCTGAGAAAATCTTCCAACTGGTTACTGACAGTGATAGAGATGCAATCTTATACAATATCATGATTGCTGGTTATGCTCATCATGGTTATGAAAATAAAGCAATTTATCTTTTTCAGGAAATGTTGAATAAAAGTGTCAAGCCAGATGCAGTCACTTTTATTGCACTTCTATCAGCTTGTCGGCATAGTGGATCAGTTGAACTAGGAGAGCAATTTTTTATTTCCATGGAACAAGATTACAATGTATTGCCGGAGATTTACCACTATGCATGTATGGTTGATATGTATGGAAGGGCTAATAAACTAGAAAAGGCAGTAAAGTTCATGAGGAAGATTCCCATACCAATAGATGCTACAATCTGGGGTGCATTTCTTAATGCCTGTCAGATGAGCAGTGATACAGCACTCGTCAAACGGGCAGAAGAGGAGCTATTAAAAGTTGAAGCAGGTAACGGGTCTAGATATGTGCAGCTGGCCAATGCCTATGCTGCCACAGGAAAGTGGGATGAGATGGGAAGAATAAGAAAGAAAATGAGAGGATACGAGGCTAAGAAGCTAGCTGGTTGCAGTTGGATATTTGTGGAAAATGGTATTCATGTATTTACTTCTGGTGATACATCTCATTCAAAAGCAGATGCAATATATTCAACTTTAATGCGCTTGAATGGGAAACTGTATTTATCTTTCGTAGAGCTGAATCAACTTAATGAAATTCAGGCTGTTTCTGTGAAGGCAGTTATTCAAGGCGGAAAAGGTGGTGCTCTACAATCTACACGACCAACTGTGTCTCATATTTGGTGGCACATGGAACATGATGAAGGATTAATGCTCCGTGATTATGAAACTCCGTTGATTCCGCCCTGGTGTGTTGGTGCTGCCATGGGTGATCTGAAGCGTGCGAATGGAAACAAAGAAACATGTCTTGAATTCTTGTGCTCTATTTCGGTTTTCAAGCATGTGAGGAGCTAG 2316 0.399 MVIRPLRVRDALVYRDHVQAIKSGLVSSIFTCNQLIHLYSNHGLLEEAHKLFDEIPHPNVFSWNAIIMAYIKANNLPHAQALFDSASHRDLVSYNSMLSAYVGSHGYETEALDLFIRMQSARDRIGIDEFTLTTMLNLAAKLRVLLYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGSFQDACTTFSGCDGMVDLISKNAMVAACCREKKMTMALNIFWKNPELNDTVSWNTLIAGYAQNGYVEKSLTLFVVMTENGIGFNEHTLASVLSACTGIKCLKLGKSVHARVLKNGCSSNKFISSGIIDFYSKCGNIRYAELVNAEIEIKSPFSVASLIAGYSSQGNMKEAQRLFDSLLERNSVVWTALCSGYVKSQQCEEVFRLFKEFLTKEAVVPDTAIIISVLGACAIQATLSLGKESHAYILRMRLHVDKKLLSALIDMYSKCGNVTYAEKIFQLVTDSDRDAILYNIMIAGYAHHGYENKAIYLFQEMLNKSVKPDAVTFIALLSACRHSGSVELGEQFFISMEQDYNVLPEIYHYACMVDMYGRANKLEKAVKFMRKIPIPIDATIWGAFLNACQMSSDTALVKRAEEELLKVEAGNGSRYVQLANAYAATGKWDEMGRIRKKMRGYEAKKLAGCSWIFVENGIHVFTSGDTSHSKADAIYSTLMRLNGKLYLSFVELNQLNEIQAVSVKAVIQGGKGGALQSTRPTVSHIWWHMEHDEGLMLRDYETPLIPPWCVGAAMGDLKRANGNKETCLEFLCSISVFKHVRS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0444 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
Vra2g0444 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Vra2g0444 771 Pfam PPR repeat family 227 273 IPR002885 -
Vra2g0444 771 Pfam PPR repeat family 463 509 IPR002885 -
Vra2g0444 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 75 354 - -
Vra2g0444 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 227 654 - -
Vra2g0444 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 221 - -
Vra2g0444 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 537 560 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 435 456 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 92 120 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 30 55 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 200 219 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 361 387 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 61 84 IPR002885 -
Vra2g0444 771 Pfam PPR repeat 334 359 IPR002885 -
Vra2g0444 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vra2g0444 771 Gene3D Tetratricopeptide repeat domain 481 649 IPR011990 GO:0005515
Vra2g0444 771 Pfam E motif 582 641 IPR046848 -
Vra2g0444 771 Gene3D Tetratricopeptide repeat domain 278 462 IPR011990 GO:0005515
Vra2g0444 771 Gene3D Tetratricopeptide repeat domain 147 277 IPR011990 GO:0005515
Vra2g0444 771 Gene3D Tetratricopeptide repeat domain 16 146 IPR011990 GO:0005515
Vra2g0444 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vra2g0444 771 TIGRFAM PPR: pentatricopeptide repeat domain 30 55 IPR002885 -
Vra2g0444 771 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Vra2g0444 771 TIGRFAM PPR: pentatricopeptide repeat domain 229 260 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0444 Vra-Chr2 3471687 3474427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0444 65 670 Glycoside Hydrolase AT3G49170 30.706 1.94e-90 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0444 - - vra:106778390 1544.25