Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0439 ATGCTATCTGCCATGGCTTTCTCTGCTCATCTTTGCCGTCTCCCTGCCTCACGTGCCGACATCGCTTTACCAGAATCTCTCACCAGGATCCGGTGCCGGAAACCTTTCTCCATCCGATGCGCCGGAGATTCCCCTTCTGCGTCTGTGGATTCCGAGTTCAACCCGAAGGTGTTTCGGAAGAATCTTACTAGGAGTAAGAATTATAACCGCAAAGGCTTTGGGTATAAGGAAGAGACCCTCCAACTCATGAATAGTGAATACACCAGTGACATCATTAAGACTTTGAAGGAAAATGGGTTCGAGTATACATGGGGTAATGTCACAGTGAAGCTGGCTGAAGCATTTGGATTCTGTTGGGGAGTTGAGAGGGCTGTTCAAATTGCTTACGAGGCCAGAAAACAGTTTCCTACTGAGACAATATGGCTCACCAATGAAATCATTCACAATCCTACCGTTTCTAAGAGGCTAGAGGATATGAAAGTGCAGAATCTTCCTCTGGAAGAAGGTTCTAAACAATTTGATGTCATCGACAGTGGTGATGTAGTCATATTGCCAGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGTGAGAAAAATGTTCGGATTGTTGATACAACTTGTCCATGGGTTGCAAAGGTTTGGAATTCCGTTGAAAAGCACAAGCAAGGAGATTATACCTCTGTAATTCATGGTAAATACGCCCATGAGGAAACTGTGGCAACTGCTTCTTTTGCTGGAAAATATATAATTGTGAAGAATATGTCAGAGGCTGAATATGTTTGTGACTATGTTCTTGGTGGTGAACTTAATGGGTCCAGTTCAACCAAAGAAGCATTGTTAGAGAAATTTAAATTTGCTGTTTCCAAGGGGTTTGATCCAGACAAGGACCTGCTAAAGCTTGGCATCGCAAATCAGACAACGATGCTCAAGGGAGAGACGGAAGAGATTGGGAAACTACTGGAGAGGACTATGATGCGCAAATATGGTGTGGAGAACGTCAACGAGCACTTCATGAGCTTCAACACAATTTGTGATGCTACACAGGAACGACAAGATGCTATGTACAAACTGGTGGAGGAAAATGTGGATCTTATATTAGTAGTTGGTGGATGGAACTCTAGCAATACATCACACCTGCAAGAAATAGCTGAGGAATATGGAATCCCTTCTTATTGGATTGACAGTGATCAAAGAATTGGTCCCGGAAACATAATAGCACACAAGTTGAACCATGGAGAGCTAGTGGAGACAGAAAACTGGTTGCCAGAAGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACTCCAGACAAGGCTGTTGAAGATGCTCTCATCAAGATTTTTGACTTGAAACGTAAAGAAGCTATGCAACTTGTGTAG 1389 0.4334 MLSAMAFSAHLCRLPASRADIALPESLTRIRCRKPFSIRCAGDSPSASVDSEFNPKVFRKNLTRSKNYNRKGFGYKEETLQLMNSEYTSDIIKTLKENGFEYTWGNVTVKLAEAFGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVSKRLEDMKVQNLPLEEGSKQFDVIDSGDVVILPAFGAAVEEMLTLSEKNVRIVDTTCPWVAKVWNSVEKHKQGDYTSVIHGKYAHEETVATASFAGKYIIVKNMSEAEYVCDYVLGGELNGSSSTKEALLEKFKFAVSKGFDPDKDLLKLGIANQTTMLKGETEEIGKLLERTMMRKYGVENVNEHFMSFNTICDATQERQDAMYKLVEENVDLILVVGGWNSSNTSHLQEIAEEYGIPSYWIDSDQRIGPGNIIAHKLNHGELVETENWLPEGPITIGVTSGASTPDKAVEDALIKIFDLKRKEAMQLV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0439 462 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 107 454 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vra2g0439 462 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 109 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vra2g0439 462 Gene3D - 209 342 - -
Vra2g0439 462 Gene3D - 343 461 - -
Vra2g0439 462 CDD lytB_ispH 109 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vra2g0439 462 Gene3D - 118 208 - -
Vra2g0439 462 Pfam LytB protein 109 447 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vra2g0439 462 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 6 460 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0439 K03527 - gmx:100818067 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0439 2 3420599 3423583 Vra2g0439 2 3420599 3423583 ECH