Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0436 ATGGCTGTTCATACACCTGCAAGTTCATGTTTTGGAGCAAAGTATCAGGCTCTAGCACCATTGAGAATTTTAAGGGGTCTGGTGTGTCTTCTGGTTCTGCTTTCAACAGCATTTATAATGCTAGTGTTCTTTGGCTTTATAAGTGCTGTTATAGTTCGACTTTTTAGTGTCCGTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCCTGGCTTGCCTTGTGGCCCTTTCTGTTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATGATGTTCCTTCGAGAGAACGGATCTTACTGATCGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGAGGAAGGGATGCCTTGGATATATAAAATATATACTTAAGAGCAGCTTGATGAGACTTCCAGTTTTTGGTTGGTCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCTGATGAGTCAATCATGCGCCATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCTCTTTTCCCAGAAGGCACTGATTTTACTGACCAAAAGTGCCTTCGGAGTCAAAAGTATGCTGCTGAACATGGGTTACCAGTTCTGAAAAATGTTCTACTTCCGAAGACAAAGGGCTTCTGCGCCTGTTTGCAAGAACTGAGGGAATCTCTCACTGCAGTTTATGATGTTACCATTGGCTACAAAAACCGCTGCCCATCTTTCTTGGACAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATTCGTTGCATCCCCATCGATACTATCCCAGTATCAGAAAGTGAAATGTCCACTTGGTTGATAAATAGATTCCAGTTGAAGGATCAGTTGCTTTCCAATTTTCAAATCCAAGGTCAGTTTCCTGATCCAGCAACACAAAGGGACCTCTCTGCTGTGAAGAGTATTTTAAATTGTATGACAATTGTTGCCGTGACAGGCACATGCATGTACTACAGTTTTTCCTCCCTCTGGTTTAAACTTTATGTGTCTCTAGTATGTTCTTATTTGGTTCCAGCCACCTATTTCAATATTCGGCCACAGCCCATTCATACCCTTTTGAAGACGAGATCAAATTGCCACCTTTCAAATACATGA 1146 0.4171 MAVHTPASSCFGAKYQALAPLRILRGLVCLLVLLSTAFIMLVFFGFISAVIVRLFSVRYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDDVPSRERILLIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMRLPVFGWSFHILEFIPVERKWEADESIMRHMLSTFKDPQDPLWLALFPEGTDFTDQKCLRSQKYAAEHGLPVLKNVLLPKTKGFCACLQELRESLTAVYDVTIGYKNRCPSFLDNVFGVDPSEVHIHIRCIPIDTIPVSESEMSTWLINRFQLKDQLLSNFQIQGQFPDPATQRDLSAVKSILNCMTIVAVTGTCMYYSFSSLWFKLYVSLVCSYLVPATYFNIRPQPIHTLLKTRSNCHLSNT* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0436 381 CDD LPLAT_LCLAT1-like 76 266 - -
Vra2g0436 381 Pfam Acyltransferase 89 243 IPR002123 GO:0016746
Vra2g0436 381 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 1 372 - -
Vra2g0436 381 SMART plsc_2 100 214 IPR002123 GO:0016746
Vra2g0436 381 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5-RELATED 1 372 - -
Vra2g0436 381 Pfam Acyltransferase C-terminus 254 322 IPR032098 -
Vra2g0436 381 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 30 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0436 Vra-Chr2 3398701 3402266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0436 14 365 Miscellaneous Gene Families AT1G75020 61.190 5.38e-162 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0436 K13513 - gmx:100814885 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0436 2 3398701 3402266 Vra2g0436 2 3398701 3402266 ECH