Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0428 ATGGCAGAGGGAAAGGGAGTTGAAACTCTTGATGATTTCGATCCTCCCAAGAAGCCCAAAACAAACTTCTATGCTTTTGGCTGCGCTATATTGGCCTCCACTACATGCATTCTACTTGGTTATGATATTGGGGTGATGACCGGTGCAGCCATATACATAAAGAAGGACCTAAAGGTGTCGGATGTGCAAATAGAGATACTCTTGGGAATCATCAACCTCTACTCTCTCATAGGCTCATGCTTGGCCGGCAGAACCTCCGACTGGATAGGCCGCCGATACACCATTGTCTTCGCCGGCACCATCTTCTTCGCCGGGGCAATTCTCATGGGTTTCTCTCCCAACTATGCCTTTCTGATGTTCGGCCGTTTCGTGGCCGGCATAGGCATCGGCTACGCCCTCATGATTGGCCCTGTCTACTCCGCCGAGGTCTCCCCAGCCTCCTATCGTGGCTTCCTCACTTCTTTCACCGATGCTTTTATTAATGGAGGGATATTACTGGGATACATATCCAACTTCGCATTTTCAAAGATGACATTGAAGTTGGGATGGCGAATGATGCTTGGGGTCGGTGCAATTCCTTCGGCACTCATAACATTGGGAGTGTTGGCGATGCCGGAATCTCCGCGGTGGCTGGTGATGAGGGGACGTTTGGGAGAGGCAACGAAAGTGCTTAACAAAACCTCCGACAGCAAGGAAGAAGCTCAACTGAGGCTGGCCGAGATCAAACAAGCCGCAGGGATACCAGAGAGTTGCAACGACGACGTCGTTCAAGTAACGAAACAAAGCACGGGCAAGGACGTTTGGAAAGAGTTGTTCCTTTATCCAACGCCTGCAGTTCGTCACATCGTAATTGCAGCGCTCGGGATTTACTGCTTCCAACAATCGTCGGGGGTGGACGCCATCGTTTTATACAGTCCGAGAATCTTCCAGAATGCTGGGATGACCGATGACACACATACGCTTCTTGCAACGGTGGCCGTTGGATTCGTGAAGACGTTGTTCATCGTGCTTTCTTCTTTAGTGTTGGACCGCGTGGGACGTCGTCCCATGTTGTTGTCTAGTGTCGGAGGCATGATGGTCTCGCTTCTCACTCTGGGAATAGCCTTTACCATCATTGAGAACTCTGAGAGTAAACCGATATGGGGCATTGGATTGAGCATAGCTATGGTGTTAGCTTTCGTGGCCACGTTTTCCATCGGTGCGGGACCCATCACGTGGGTATACAGCGCTGAGGTCTTTCCGTTGAGGTTGCGGGCGCAGGGTGTGGCCGCCGGTGTTGTGGTGAATAGAGTCAGTAGTGGGGTTGTTACAATGACCTTTTTGTCCCTCACTAAAGCCATCACTTTTGGTGGAACTTTCTTTCTCTATTCTGGTATTTCAGTGATCGGGTGGTTATTCTTCTACTTTGCGCTTCCCGAGACACGGGGTAAAACACTTGAAGAAATGGAAGGGGCTTTCGGTCATTTCGGAGCCAAATCTAACTCCAAATACAAGGGAGTAGAAAATGGAAATGGCAAAGTGCCACAAGTTCAGATGGGGACCAATCTCAGCACTTAA 1557 0.4997 MAEGKGVETLDDFDPPKKPKTNFYAFGCAILASTTCILLGYDIGVMTGAAIYIKKDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGTIFFAGAILMGFSPNYAFLMFGRFVAGIGIGYALMIGPVYSAEVSPASYRGFLTSFTDAFINGGILLGYISNFAFSKMTLKLGWRMMLGVGAIPSALITLGVLAMPESPRWLVMRGRLGEATKVLNKTSDSKEEAQLRLAEIKQAAGIPESCNDDVVQVTKQSTGKDVWKELFLYPTPAVRHIVIAALGIYCFQQSSGVDAIVLYSPRIFQNAGMTDDTHTLLATVAVGFVKTLFIVLSSLVLDRVGRRPMLLSSVGGMMVSLLTLGIAFTIIENSESKPIWGIGLSIAMVLAFVATFSIGAGPITWVYSAEVFPLRLRAQGVAAGVVVNRVSSGVVTMTFLSLTKAITFGGTFFLYSGISVIGWLFFYFALPETRGKTLEEMEGAFGHFGAKSNSKYKGVENGNGKVPQVQMGTNLST* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0428 518 SUPERFAMILY MFS general substrate transporter 14 483 IPR036259 -
Vra2g0428 518 Coils Coil 224 244 - -
Vra2g0428 518 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 12 509 IPR045262 GO:0015144
Vra2g0428 518 ProSitePatterns Sugar transport proteins signature 2. 124 149 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0428 518 ProSitePatterns Sugar transport proteins signature 1. 82 99 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0428 518 PANTHER SUGAR TRANSPORTER 12 509 - -
Vra2g0428 518 Pfam Sugar (and other) transporter 29 486 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra2g0428 518 PRINTS Sugar transporter signature 36 46 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0428 518 PRINTS Sugar transporter signature 119 138 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0428 518 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0428 518 PRINTS Sugar transporter signature 387 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0428 518 PRINTS Sugar transporter signature 410 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0428 518 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0428 518 Gene3D MFS general substrate transporter like domains 18 488 IPR036259 -
Vra2g0428 518 ProSitePatterns Sugar transport proteins signature 1. 338 354 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0428 518 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 475 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0428 Vra-Chr2 3323838 3325969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0428 15 515 Organic Solute Cotransporters AT3G18830 65.010 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0428 - - vun:114168664 971.459