Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0422 ATGGAGGAGAAACGCCGCGAAGCTGCTCCCTCCGCCGCAGATTCTCCGGCATCGGAGCCCGCATCGTCTCGCCGCCGCGCCGGGGCCAACAAGCGCAAGTCAGCCGCTCTCAACGCCTCTGGTTCCTCCTCCGCCCCCTCCAAACGCGCCGCTCGCGACAAGGCCTCGCCGCTCCACCCTCCTCCCCTCCACAATGGCCCCCTCACCCGGGCCCGCCAGACCCCCAACTCCCTCGCCGCCGCCGCTTCCTCGTCCGCCGCTGCTTCCGCTCCCGCCGCCGTCAAACACTCCGAACGCACCCATCCTTCCGCTGCAGACTCCGCCGCGCTGGCTGAGCAGCTGAGGAAGGAGAGCGAGTGGGAGACTCTGGAGGCCGCGATTGAAGCGGAATTCGAAGCCATCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTTGTATATTCATGAAATTGAGAAGCAAATGTTACCTTCTTTCTTTAATGGCAAAACTGAAAATCGGACGCCTGGTGTATACATGGAGATACGAAATTGGATAATGAAGAAGTTTCATTCAAATCCGAATGTGCAAATTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGATATGGATGCTAGGCAAGAGGTAATGGAGTTTCTGGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTGCTGTGGCCACTGCCAGTGATGACGGAGAAGCAGAAAAAAGTTCTTTGCTTGAAAAATTGTATCACTTTGAAACTCTGCAATTATGTCGACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACAGCCTCTGGCTTGTTTCCAGAGTCTACCATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCTGTTGAGATGCTTGAGTACCATTGCAATTCATGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAGGTGGACTGATCAAGAGACCCTTCTGCTACTAGAAGCCTTAGAACTTTATAAAGAAAATTGGAATGAAATCGCTGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATCGTACTTTGTTCAAATGCCAATTGAGGATACCTTTGCTGAATTTGATGATAATATTGATGCTGGTTGCAAAGAACCAACAGATCCAGTTGCAACAAACAATGACTCATCTGTGGACAAGGACGCTTCAGAGTGTATTGAGAATGATACTAGCGATGGCATCAAAGACCAGGATAAAAATTCCAAGGCTGAGGATGTTGAAGTAAAGGTGAATCAGGAGGATAATCTAAAGTTACAAGAAGGTAGTGATGAGAAAGCCAGTGAGGGAACTTCTAAATCTGAAGATGCTGTTAAGGGGAAGTCTGATCAGGAAGCAAGTAATGAATGTGCTATAAATGCTCTCAAGGAAGCATTTGCTGCTGTTGGTTATTCTCCTGGACCTGATGGACCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCACTGGCAACGTTCCTTGCACACTTGGTGGGTACTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCCATGTCAAGAAATTCTCCTGGCACTGACCTTGCTGCAAGGTGTTGCTTTCTTCTAGAAGATCCGCCAGATAATAAGAATGAACCAACTAGTTCTGAGAAGGATTCTAAAAGTGAGGGAGATCAGGACGAAGTAAATGTAAAGAAGGACAAACCAATGTTGGATGATAAAGATTTACCAAATGATCACAGTAATATGAAAGTTGGAAGTGACACTTTAGAAGACAAGGGACAGCCGGCTTCCACAGATGGTGCAGCCTCAGAAAAGCCAATTTCCCCAAAGGAGCAACCAATGGTTAATCATGAAAGTGGGCTAGACAATTGTAATGCTCCTATCAGTGCAAAGCTATCCAATGATCAAGCACCAGACACTCTGCATGATTCAGGCGGTTCAACATCCAAGGCTGAAACTAAATCTAATTCTGACCAGGTTCAGGAGGGATCCTTAATTGAAGAACCTTGTCCTGCAAAGGGCATATGTGTGTCTGATTCTCTTCCATCGGAGAAGAAAGAACATCAGCCACTAAAATCCAATTTACCAGGAGAGTGTCCAAAGCTAGTAGAGACATCAAAATGTGAGATAGTCTCTGATTCTATTCCCCCAACTAAGAACAAGTCTCAAAATCCACAATCTACAAATCCAGTTTGTGAATCTGTAGAAACAACAGACTCAGCCATGGATGTTGAAGGAGTTTCTAATTCCTTGCCGTCAGAAAAGGTTGACTCGCAGGCACTATTTACAACAAAATCATCCCAATGTAATGGGATAGAAAAGGATGTAGATATGATGTCACCATCAAATCCAGTTAGATCAAATTCTGCTGCTGAAAATGGTGCAAATACAGGGACAGGTAAAGATCAGACAGATAATGGAGCAAAAGTGGAAGATAACGATACGAGGATTAAACAGGACAGCAATTTTGAGAAAATGAAACGAGCTGCAGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAAGTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTAATAGAAAAACAGTTGCTCAAGTTGGAAACTAAGGTGGCTTTTTTCAATGAGGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGCGATCAAGGCACAAGCTTTATCATGAGCGTGCGTTGATTATTGCATCGCGGCTTGGTATATCAGCTTCGTCCTCTAGAGGTATACCACCAACAGTATCAACTAATAGAATTCCTACAAATATTGCGAACTCACTCCAAAGACCACAAATGATGATGAGTCCACAAAGGCCACTTCTTTCTAGACCTGCAGCCACTGTAGCTACAACTCTTCAAAACCCATTAGCATCTTCGACTGCAGCAGGAAACTCAGTTCGGCCATCTAACCAGGAAAAACTTTCTTCTGTTGGGACAAAATAA 3114 0.4534 MEEKRREAAPSAADSPASEPASSRRRAGANKRKSAALNASGSSSAPSKRAARDKASPLHPPPLHNGPLTRARQTPNSLAAAASSSAAASAPAAVKHSERTHPSAADSAALAEQLRKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWFSWLYIHEIEKQMLPSFFNGKTENRTPGVYMEIRNWIMKKFHSNPNVQIELKDMSQLNVGDMDARQEVMEFLDYWGLINFHPFPSMDSAVATASDDGEAEKSSLLEKLYHFETLQLCRPVQRSSQMTPATASGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGRWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCISYFVQMPIEDTFAEFDDNIDAGCKEPTDPVATNNDSSVDKDASECIENDTSDGIKDQDKNSKAEDVEVKVNQEDNLKLQEGSDEKASEGTSKSEDAVKGKSDQEASNECAINALKEAFAAVGYSPGPDGPSSFAEVGNPVMALATFLAHLVGTDVAVASAHSSIKSMSRNSPGTDLAARCCFLLEDPPDNKNEPTSSEKDSKSEGDQDEVNVKKDKPMLDDKDLPNDHSNMKVGSDTLEDKGQPASTDGAASEKPISPKEQPMVNHESGLDNCNAPISAKLSNDQAPDTLHDSGGSTSKAETKSNSDQVQEGSLIEEPCPAKGICVSDSLPSEKKEHQPLKSNLPGECPKLVETSKCEIVSDSIPPTKNKSQNPQSTNPVCESVETTDSAMDVEGVSNSLPSEKVDSQALFTTKSSQCNGIEKDVDMMSPSNPVRSNSAAENGANTGTGKDQTDNGAKVEDNDTRIKQDSNFEKMKRAAVSTLAAAAVKAKVLANQEEDQIRQLTSLLIEKQLLKLETKVAFFNEVENVVMRAREHVERSRHKLYHERALIIASRLGISASSSRGIPPTVSTNRIPTNIANSLQRPQMMMSPQRPLLSRPAATVATTLQNPLASSTAAGNSVRPSNQEKLSSVGTK* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0422 1037 MobiDBLite consensus disorder prediction 831 854 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 762 789 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 1 111 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 425 505 - -
Vra2g0422 1037 SMART zz_5 303 347 IPR000433 GO:0008270
Vra2g0422 1037 MobiDBLite consensus disorder prediction 69 84 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 823 871 - -
Vra2g0422 1037 ProSiteProfiles SWIRM domain profile. 142 239 IPR007526 GO:0005515
Vra2g0422 1037 SUPERFAMILY RING/U-box 299 346 - -
Vra2g0422 1037 ProSiteProfiles Myb-like domain profile. 358 408 IPR001005 -
Vra2g0422 1037 CDD ZZ_RSC8 307 351 IPR041984 -
Vra2g0422 1037 Pfam SWIRM-associated region 1 883 960 IPR032451 -
Vra2g0422 1037 ProSitePatterns Zinc finger ZZ-type signature. 309 335 IPR000433 GO:0008270
Vra2g0422 1037 Pfam Zinc finger, ZZ type 306 341 IPR000433 GO:0008270
Vra2g0422 1037 SUPERFAMILY Homeodomain-like 361 412 IPR009057 -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 592 636 - -
Vra2g0422 1037 ProSiteProfiles SANT domain profile. 365 412 IPR017884 -
Vra2g0422 1037 Gene3D - 301 350 IPR043145 -
Vra2g0422 1037 SMART sant 362 410 IPR001005 -
Vra2g0422 1037 Gene3D - 361 412 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 441 503 - -
Vra2g0422 1037 Gene3D - 148 233 IPR036388 -
Vra2g0422 1037 Pfam SWIRM domain 145 230 IPR007526 GO:0005515
Vra2g0422 1037 ProSiteProfiles Zinc finger ZZ-type profile. 304 358 IPR000433 GO:0008270
Vra2g0422 1037 MobiDBLite consensus disorder prediction 585 749 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 855 871 - -
Vra2g0422 1037 Pfam Myb-like DNA-binding domain 364 406 IPR001005 -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 35 49 - -
Vra2g0422 1037 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 41 1001 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 668 713 - -
Vra2g0422 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 361 400 IPR017930 -
Vra2g0422 1037 SUPERFAMILY Homeodomain-like 149 231 IPR009057 -
Vra2g0422 1037 CDD SANT 382 407 IPR001005 -
Vra2g0422 1037 PANTHER SWI/SNF COMPLEX-RELATED 41 1001 - -
Vra2g0422 1037 MobiDBLite consensus disorder prediction 1013 1037 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0422 Vra-Chr2 3273352 3279137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0422 307 404 EF-hand Containing Proteins AT3G07740 36.207 9.30e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0422 K11649 - gmx:100799723 1625.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0422 2 3273352 3279137 Vra2g0422 2 3273352 3279137 ECH