Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0420 ATGGCGCAGCCTCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGAGTATTCTCCCTTTGCGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCTCAGGTTATCACGAAACTTTTATACCTACTAAACCAAGGAGATACATTTACAAAGGTAGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTTCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATAATAAAGGAACTTTCCCCCTCTGCGGATGAGGTTATTATCGTTACAAGCTCCCTCATGAAGGACATGATTAGTAAGACTGATATGTACAGGGCTAATTCTATTCGTGTCCTTTGTCGCATCACAGATGGAACACTCCTCACCCAAATAGAGCGATATCTGAAACAAGGAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCCTTAGTTAGCGGCATTCATCTGCTTCAGACGTCTCCAGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCAGTTCAATCAAGGGCAGCTCTTGTGCAATTTCATGCACTGGCTTTGCTCCACCAGATACGGCAGAATGATCGACTAGCTGTTAGCAAACTGGTTAGCAGCTTGACCAGGGGGAATGTTCGTTCTCCTTTGGCTCAATGCCTTTTGATTCGCTATACAAGTCAGGTAATTCGGGAGTCAGGAAATATCACACAATCAGGAGATCGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCAGCCAGGGCAATTACAGAGCTCAATGGAGTAACTAGCCGAGAATTAACTCCTGCAATTACAGTTCTTCAGCTCTTCTTAAGTTCGTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTAAACAAGGTGGCAATGACACATGCAATGGCAGTGACTAACTGCAATATTGACATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCAACACTTGCCATCACTACTCTATTGAAAACAGGAAATGAATCTAGTGTGGACCGGCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAATTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCTTAAAATTCCCTTTAAAATATAGATCTCTGATGAATTTCCTAAGTAATATTCTCAGGGAAGAAGGTGGTTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATCAGAGATATCCCTGAGGCCAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATTCTGCACTTCCTGGGAGTTGAAGGACCAAAAACATCCGACCCCAGCAAATATATTCGTTATATATATAACAGAGTACATCTTGAGAATGCGACTGTTAGGGCCAGTGCTGTTAGCACAATGGCAAAGTTTGGGGCTTCTGTTGATGCATTAAAGCCTCGCATATTTGTACTGCTAAAGCGATGTCTTTTTGACAGCGATGATGAGGTCCGTGACAGAGCAACTCTTTATTTGAACACCCTTGGAGGTGATGGCAGAGTGGTTGAGACAGATGAAGATGTGAAAGATTTCCTCTTTGGGTCATTTGATATTCCACTTGCCAATCTGGAGACTAGTTTGAAAAACTATGAGCCTTCAGAAGAGGCTTTTGACATTGGTTCCGTGCCCAGGGAGGTTAAATCTCAACCTCTTGCAGAGAAGAAGGCCTCTGGTAAAAAGCCTACCGGTTTGGGTGCTCCTCCTCGTGGTCCCTCATCTACTACAGATTCCTATGAAAGGTTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAACTTTTTAAGTCTTCAGAACCTGTGGAGCTTACTGAGGCGGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTCGTGTTTCAATACAACTGCACAAACACGATACCAGAACAATTATTGGAAGATGTTATTGTAATTGTGGATGCATCCGAAGCAGAAGAGTTCTCTGATGTGTGCTCAAAACCTCTTAGATCTCTTCCTTATGATTCACCTGGCCAGACATTTGTGGCTTTTGAGAAGCCTGAGGGATTACCAGTTGCTGGAAAATTTTCTAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAGCCACTGGTGAGGCAGAAGATGATGGTGTAGAGGATGAATACCAGCTAGAGGATTTGGAGGTTGTTACAGCAGACTACATATTGAAAGTCGGGGTGTCTAATTTCAGGAGTGCATGGGAAAGCATGGGCCCTGAAAATGAGCGAGTGGACGAATATGGTCTTGGTCCCAGGGAGAGTTTGGCTGAAGCTGTAAATACTGTCATCAATCTTCTTGGTATGCAGCCTTGTGAGGGAACCGAGGTAGTGCCGCCCAATTCAAGGTCATACACATGCTTGTTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGATGGTCCGAAGGATGTTGCGATGAAACTGTCTGTCAGATCCGAGGATGAAACTGTCAGCGACACCATCCATGAGATTGTGGCTAGTGGCTAG 2664 0.4321 MAQPLVKKDDDRDDEAEYSPFAGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGDTFTKVEATEVFFAVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMISKTDMYRANSIRVLCRITDGTLLTQIERYLKQGIVDKNPVVASAALVSGIHLLQTSPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVSSLTRGNVRSPLAQCLLIRYTSQVIRESGNITQSGDRPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHAMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTMAKFGASVDALKPRIFVLLKRCLFDSDDEVRDRATLYLNTLGGDGRVVETDEDVKDFLFGSFDIPLANLETSLKNYEPSEEAFDIGSVPREVKSQPLAEKKASGKKPTGLGAPPRGPSSTTDSYERLLLSIPEFANFGKLFKSSEPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSDVCSKPLRSLPYDSPGQTFVAFEKPEGLPVAGKFSNVLKFIVKEVDPATGEAEDDGVEDEYQLEDLEVVTADYILKVGVSNFRSAWESMGPENERVDEYGLGPRESLAEAVNTVINLLGMQPCEGTEVVPPNSRSYTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDTIHEIVASG* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0420 887 PIRSF Gamma-COP 7 885 IPR017106 -
Vra2g0420 887 SUPERFAMILY ARM repeat 27 561 IPR016024 -
Vra2g0420 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vra2g0420 887 SUPERFAMILY Clathrin adaptor appendage domain 618 771 IPR013041 -
Vra2g0420 887 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vra2g0420 887 Gene3D - 769 885 IPR012295 -
Vra2g0420 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 IPR017106 -
Vra2g0420 887 Gene3D Coatomer, gamma subunit, appendage domain 615 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vra2g0420 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Vra2g0420 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Vra2g0420 887 MobiDBLite consensus disorder prediction 593 621 - -
Vra2g0420 887 Gene3D - 23 316 IPR011989 -
Vra2g0420 887 Gene3D - 333 550 IPR011989 -
Vra2g0420 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0420 Vra-Chr2 3255188 3263279 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0420 K17267 - gmx:100789362 1649.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0420 2 3255188 3263279 Vra2g0420 2 3255188 3263279 ECH