Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0418 ATGCCTGTGATGTATGATATATTTTCATGTTGCCTTTTCATAAGAACATATTCTCGAACTACCATGGCTACGCATTCCAACTCTTCATTCCTCCTCCACCTTTCCTTCATCATCAATGCAGTCTACATTGCTGTTTCACAACCCTTCATCGGCGTCAACTATGGCCAGGTCGCCGACAATCTTCCAGCACCGGAGGCATCGGCAGAGCTTCTCAAGTCTACGACGGTCGGGAAAGTACGTCTTTACGGCGCGGATCCGGCAATCATAAAGGCGCTAGCGAACTCCGGCATTGGAATCGTCATCGGCGTGGCCAACGGCGACATTCCGAGTTTGGCGTCTGATCCCGACTCGGCGACTCAGTGGGTCAACGCGAACGTGTTGCCACATTACCCCGAAAGCAACATTACTATGATCGCTGTCGGCAACGAGATCATGAGCTCCGGCGACGATGGCCTCGTCTCGCAGCTACTCCCGGCGATGCAAAATGTCCAGAACGCCCTCAACTCGGCCTCACTCGGTGGCAAAATAAAAGTTTCCACGGTGCATTCTATGGCCGTGTTGACTCAGTCGGAGCCTCCCTCGGCCGGGTCATTCGACCCAGGTTTGATGGATATCCTCCAACCGTTGGTAGCGTTTTTGAAGAATAACGAGTCACCTTTCGCCATCAACCCATACCCGTTCTTCGCTTACCAGAGTGACCCGAGACCAGAAACACTCGCATTCTGTCTATTTCGACCGAATTCGGGTCGGGTCGATCAGATTAGCGGGAAGGTTTATTCGAACATGTTTGACGCCCAGGTGGATGGTGTGCAGAGTGCATTGAGAAGGATGGGATTTGAAGAGATGGAGATTGTGATTGCTGAGACAGGATGGCCCTCTCGTGGGGACAGGGATGAAGCAGGAGCTACTGTTGAAAACGCCAGAGCCTACAATGGAAACCTCATTGCACACCTTAGATCAATGGTTGGCACACCTTCCATGCCTGCCAAATCTGTCGACACATTCATCTTTGCACTCTATGATGAAGATCTCAAACCTGGTCCACCCTCTGAAAGAGCATTTGGCCTCTTCAAAACTGATCTCACCATGGCATATGATGTTGGCCTACACAACTCTGCCTCAATCCATAAGAATCCACCCACTAGTCCTGTTACTCCAGAAAGGGAAACACAATGGTGCATACCAAAAATGGAAGTGAGTGAGGCTGAGTTGCAGAGAAATATTGATTATATCTGTGGTAGCCAAGTTATAGATTGTGGACCAATTCAGTCAGGAGGTGCTTGTTATGAACCAAACACGGTCTTATCTCATGCTGCCTTTGCTATGAATCTCTATTACCAGAACTTTGGAAGAAATCCATGGAACTGTGATTTCTCTCAAACGGCAATGCTTACTTCTCAAAATCCAAGTTACAGTGATTGTGTTTATCCTGGTGGAAGTATCTGA 1446 0.4882 MPVMYDIFSCCLFIRTYSRTTMATHSNSSFLLHLSFIINAVYIAVSQPFIGVNYGQVADNLPAPEASAELLKSTTVGKVRLYGADPAIIKALANSGIGIVIGVANGDIPSLASDPDSATQWVNANVLPHYPESNITMIAVGNEIMSSGDDGLVSQLLPAMQNVQNALNSASLGGKIKVSTVHSMAVLTQSEPPSAGSFDPGLMDILQPLVAFLKNNESPFAINPYPFFAYQSDPRPETLAFCLFRPNSGRVDQISGKVYSNMFDAQVDGVQSALRRMGFEEMEIVIAETGWPSRGDRDEAGATVENARAYNGNLIAHLRSMVGTPSMPAKSVDTFIFALYDEDLKPGPPSERAFGLFKTDLTMAYDVGLHNSASIHKNPPTSPVTPERETQWCIPKMEVSEAELQRNIDYICGSQVIDCGPIQSGGACYEPNTVLSHAAFAMNLYYQNFGRNPWNCDFSQTAMLTSQNPSYSDCVYPGGSI* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0418 481 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 28 473 IPR044965 GO:0004553|GO:0005975
Vra2g0418 481 SUPERFAMILY (Trans)glycosidases 50 367 IPR017853 -
Vra2g0418 481 Gene3D Glycosidases 49 377 - -
Vra2g0418 481 Pfam Glycosyl hydrolases family 17 50 367 IPR000490 GO:0004553|GO:0005975
Vra2g0418 481 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 28 473 - -
Vra2g0418 481 Pfam X8 domain 391 463 IPR012946 -
Vra2g0418 481 Gene3D - 388 476 - -
Vra2g0418 481 SMART X8_cls 391 476 IPR012946 -
Vra2g0418 481 ProSitePatterns Glycosyl hydrolases family 17 signature. 282 295 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0418 Vra-Chr2 3246171 3249052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0418 46 477 Miscellaneous Gene Families AT2G16230 63.594 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0418 - - gmx:100778892 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0418 2 3246171 3249052 Vra2g0418 2 3246171 3249052 ECH