Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0401 ATGGTGTCTGCTTGTGTGAACTTGAAAGCCAATACCCATTTCGTAAACTCGAGAAAAGACAATATTTTTCGTCAAGATGGTGGTTTTTTAGGTGAGAGACTCAAAGGGAGCCTTAATTACAGTCCCTGGATCATTAATCAATTGGCCTTAAGTTTGAGTACCCAGGAGAGGGTGAAGAAGGCCAAACCTGGTGTTGTTTCTGCTGTTCTTACGTCAAGTACTACCAAAGAATCAGTGGCTTTTCAAATGCCAGCGTTTCTCAGAAGAAAGGCTGACCCAAAAAATGTCGTTTCCATCATTTTGGGAGGCGGTCCTGGGATTCAACTATTTCCTCTCACCAAACGAGCTGCTACACCTGCTGTTCCTGTCGGAGGATGTTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTGGCCTCAACAAAATATTTGTTCTGACCCAATTCAACTCTGCATCCCTCAACCGTCACATCTCCCGCACCTATTTTGGAAATGGAATCAACTTCGGCGATGGATGTGTGGAGGTTCTGGCGGCTACTCAAACTCCAGGAGAAGCTGGAAAGAAATGGTTCCAAGGAACCGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAAAACACAAACATTGAGAATGTATTGATCTTGGCCGGAGATCATCTATACCGAATGGATTACATGGACCTTGTGCAGAGTCACGTTGACAGAAATGCAGATATTACAGTATCATGTGCTGCTGTAGGTGACAGCCGTGCATCAGATTATGGATTGATCAAGGTAGATGGCAGAGGTCGCATCATCCATTTTTCAGAAAAACCCAAGGGTCCTGATCTAAAAGCAATGCAAGCAGATACTTCTGTTTTCGGGTTGTTACCCCATGAGGCAAAAAAGTCACCATACATTGCATCTATGGGGGTTTATGTATTCAAGACGGATGTTTTACTCAAACTTTTGAAATGGAGATATCCTACAGCTAATGACTTCGGATCTGAAATCATTCCTGCAGCTGTGAGGGAACACAATGTCCAGGCGTATTTATACAATGACTATTGGGAAGACATCGGAACAATAAAATCGTTTTACGATGCTAACTTGGCTCTTACTGAAGAGAATCCAATGTTCAAATTTTATGACCCCAAAACACCCATTTACACATCTCCAAGATTCCTGCCACCCACAAAGATTGACAAATGCCGGATTGTGGATGCAATAATCTCCCATGGATGTTTCCTAAGGGAATGTATCGTTCAACATTCCATAGTGGGGGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCAGGACACTGTAATGATGGGAGCTGACTATTACCAAACTGAATCAGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTTCCCATTGGGATTGGAAGGAATGCAAAAATTAGAAACTGCATAATTGACAAGAATGCAAAGATAGGGAAAGATGTCATCATCACAAACAAAGATGGAGTTCAAGAAGCAGATAGACCAGATGATGGATTTTACATTCGATCAGGAATCACAGTCATATTGGAGAAGGCAACAATAGAAGATGGAACTGTCATATAA 1587 0.4266 MVSACVNLKANTHFVNSRKDNIFRQDGGFLGERLKGSLNYSPWIINQLALSLSTQERVKKAKPGVVSAVLTSSTTKESVAFQMPAFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKNTNIENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLIKVDGRGRIIHFSEKPKGPDLKAMQADTSVFGLLPHEAKKSPYIASMGVYVFKTDVLLKLLKWRYPTANDFGSEIIPAAVREHNVQAYLYNDYWEDIGTIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECIVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNAKIRNCIIDKNAKIGKDVIITNKDGVQEADRPDDGFYIRSGITVILEKATIEDGTVI* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0401 528 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 96 493 IPR011831 GO:0005978|GO:0008878
Vra2g0401 528 CDD LbH_G1P_AT_C 396 522 - -
Vra2g0401 528 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 82 393 IPR029044 -
Vra2g0401 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 307 317 IPR005836 GO:0005978|GO:0008878
Vra2g0401 528 CDD ADP_Glucose_PP 99 359 - -
Vra2g0401 528 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 528 IPR011831 GO:0005978|GO:0008878
Vra2g0401 528 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 489 IPR029044 -
Vra2g0401 528 Pfam Nucleotidyl transferase 98 374 IPR005835 GO:0009058|GO:0016779
Vra2g0401 528 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 528 - -
Vra2g0401 528 Gene3D Hexapeptide repeat proteins 394 528 - -
Vra2g0401 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Vra2g0401 528 SUPERFAMILY Trimeric LpxA-like enzymes 390 528 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0401 Vra-Chr2 3106033 3110825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0401 K00975 - gmx:100808791 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0401 2 3106033 3110825 Vra2g0401 2 3106033 3110825 ECH