Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0392 ATGACTCCCAAATTTCAAAAGGTAGTCTCCACGGCGGCGTCCGTGGCGGCCACCGTGATGCTCCTGCGCTCGTTCACCCGCAACTACATTCCCCCGGAGTTCCAAAACTACCTCCACTCAAAACTATCGAAACTCCTCTCCTCCTTCTCCACGGAACTCACCCTCGTTATCGACGAATTCAACGGGCTCACTCCGAACCCGCTCTTCGCCGCGGCGCAGCTCTACCTCAAGCCGCAGGAGGCGCCGAACACGAAGCGCTTCCGCGCCACGATGTCTTCGAGATCGCGCCACGTGTCCCTCCTCATGGACGGCAACGACGAGATCACGGACTCCTTCAACGGCGTGCCGTTCCGGTGGAGGCTCGTGTCCCGACGCGGCAAATCGAATTCCGCGGTGCACGTCTTCGAGGTGCGGTTCCACAAGAAGCACCGGGAGATGGTTCTGTCGGAGTATTTTCCGCGCGTGATGAAGGAGGCGGAGGCGGTGCATGAGCGGAGGAAGACGCTGAGGCTCTTCACGGTGAAGGACACGCGGTTTCGGAGGGGAGGGAGGGGGAAGTTGTGGCAGGGCGTGAATCTTGAGCACCCTGCGACGTTTGCGACTGTGGCGATGGATTGGGAATTGAAGGAGATGATAATTAGGGATTTAGATAGGTTTGTGGAGAGGAAGGGTTTATATAAGAGTGTTGGAAAGGCGTGGAAGAGAGGGTACTTGCTTTCGGGTCCCCCCGGAACTGGGAAATCGAGTTTGATTGCTGCTATGGCTAATTATCTGAATTTCGATGTCTATGACTTAGAACTCACTGCTGTTAATGGAAATTCTGACCTTAGGAGGTTGTTGATTGCCACCAGGAACCGTTCCATTCTTGTCGTGGAGGACATTGATTGCTCCCTTCATTTGCAGGATAGGCTTGCAAAACCTAAATCATCACAACCCCACCGCTTCATCCCACGCCATTTTCACTCATTTCCAGCACCCCAGGTGACATTATCGGGGTTCCTGAATTTCATAGATGGGTTGTGGTCGAGTTGTGGGAATGAGAGAATCGTAGTGTTCACCACGAATCATAAGAAGAAATTGGATCCTGCTCTCTTGCGCCCTGGGCGTATGGATGTGCACATTGACATGACTTACTGTACCCCTGGTGGGTTCAAAATGCTGGCTTCCAATTACCTTGGGATCACGGAGCACCCTCTTTTTGTTCAAATTGAGAACTTGCTTGGGATGATCGATGTCACTCCTGCAGAGGTAGGGGAGCAGTTTTTGCTGGACGAAGACCCAGATATTGCACTCAACAGCCTGATGGACCTCCTTCTTGAGAAGAAACGAAATCACGAATTGCAGATAAAAGTACCTCTCACCGTTGAATGA 1371 0.5259 MTPKFQKVVSTAASVAATVMLLRSFTRNYIPPEFQNYLHSKLSKLLSSFSTELTLVIDEFNGLTPNPLFAAAQLYLKPQEAPNTKRFRATMSSRSRHVSLLMDGNDEITDSFNGVPFRWRLVSRRGKSNSAVHVFEVRFHKKHREMVLSEYFPRVMKEAEAVHERRKTLRLFTVKDTRFRRGGRGKLWQGVNLEHPATFATVAMDWELKEMIIRDLDRFVERKGLYKSVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTAVNGNSDLRRLLIATRNRSILVVEDIDCSLHLQDRLAKPKSSQPHRFIPRHFHSFPAPQVTLSGFLNFIDGLWSSCGNERIVVFTTNHKKKLDPALLRPGRMDVHIDMTYCTPGGFKMLASNYLGITEHPLFVQIENLLGMIDVTPAEVGEQFLLDEDPDIALNSLMDLLLEKKRNHELQIKVPLTVE* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0392 456 Gene3D - 375 443 - -
Vra2g0392 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 417 IPR027417 -
Vra2g0392 456 SMART AAA_5 233 380 IPR003593 -
Vra2g0392 456 ProSitePatterns AAA-protein family signature. 348 366 IPR003960 GO:0005524|GO:0016887
Vra2g0392 456 Pfam Domain associated at C-terminal with AAA 30 122 IPR025753 -
Vra2g0392 456 CDD AAA 234 378 - -
Vra2g0392 456 Gene3D - 189 374 IPR027417 -
Vra2g0392 456 PANTHER BCS1 AAA-TYPE ATPASE 3 445 - -
Vra2g0392 456 Pfam ATPase family associated with various cellular activities (AAA) 238 376 IPR003959 GO:0005524|GO:0016887
Vra2g0392 456 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0392 Vra-Chr2 3056855 3058794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0392 199 376 Miscellaneous Gene Families AT2G29080 29.570 8.85e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0392 K08900 - gmx:100789716 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0392 2 3056855 3058794 Vra2g0392 2 3056855 3058794 ECH