Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0391 ATGGCAAGTGATTCTTTTGTGATTTCCAATGGCAATGGCAATGGCAATGAAAGTGGCAATGGCAATGGCAAGTCAGAGCCTCTTCCACAGAGGACTTACCAAGCAGTAGTGATTGCCACCAGAGACATGGGCATTTCTAAGGATGGAAAATTGCCCTGGACGTTACCCACTGATCTCAAATTTTTTGATGAGATCACTACTATAACGTCTGATCCGGGGAAGAAGAATGCTGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAGGATAGGCCTCTTCCTGGTCGCCTTAACGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACTGCAGAGAATGTTGTAATATGTGGAAGTGTGTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGAGATATTCAGAGAGGCTCTCAATGCACCTGGATGCGAAGCTGCTCATATTACAGAAATTGAGGCAAGCATTGAGTGTGATACTTTTATGCCTCGAGTTGATACCTCTCTATTTCAGTCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCAACACTTATGTGCGTGTAAGGAGTTCTCCGGCTGAGTCCCTAAGTCAGAATGCTGATCCAGTTTTTGATAATGGTTCAGACTCTTTAAAATTTGAGGTCAATGAATTTTCTTTTCTTCCGAAATTCATTTATGAGAGACATGAAGAATTTAAGTATCTAAGTTTGGTTCGAGAAATTATTTCTGAAGGCACAATTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGCTTCTAACAACCAAGAAAGTATTTTGGCGAGGGGTTGTTGAGGAGCTTCTTTGGTTCATCAGCGGCTCAACAAGTGCCAAGGTGCTGCAAGAAAAAGGCATTCATGTCTGGGATGACAATGCATCTAGAGAATACCTTGATAGCATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTCTGGATGTTATTGACAAGATAAAGCATAACCCTGATGATCGACGGATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCCCCCTGCCACATTTTTGCGCAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTAGTCATGTTATCGGGGATGCACATGTTTACCGCAATCATGTGAGACCTCTTCAGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCCTTTGTTGCTGCCGATTTCAAGCTCATAGGATATGACCCTCACAAGAAGATAGAAATGAAGATGGCTGTTTAG 1611 0.4314 MASDSFVISNGNGNGNESGNGNGKSEPLPQRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFDEITTITSDPGKKNAVVMGRKTWESIPPEDRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRVDTSLFQSWYSSFPLVEDNLRYSFNTYVRVRSSPAESLSQNADPVFDNGSDSLKFEVNEFSFLPKFIYERHEEFKYLSLVREIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHVWDDNASREYLDSIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVIDKIKHNPDDRRIILSAWNPSDLKLMALPPCHIFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFSHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHKKIEMKMAV* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0391 536 PRINTS Thymidylate synthase family signature 294 315 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 PRINTS Thymidylate synthase family signature 387 406 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 PRINTS Thymidylate synthase family signature 413 428 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 PRINTS Thymidylate synthase family signature 431 457 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 PRINTS Thymidylate synthase family signature 469 486 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 536 - -
Vra2g0391 536 ProSitePatterns Thymidylate synthase active site. 398 426 IPR020940 GO:0004799|GO:0006231
Vra2g0391 536 Pfam Thymidylate synthase 255 536 IPR023451 -
Vra2g0391 536 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 32 209 IPR001796 GO:0004146|GO:0046654
Vra2g0391 536 PIRSF DHFR-TS 17 536 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vra2g0391 536 Gene3D Dihydrofolate Reductase, subunit A 19 211 IPR024072 -
Vra2g0391 536 CDD DHFR 35 208 IPR001796 GO:0004146|GO:0046654
Vra2g0391 536 CDD TS_Pyrimidine_HMase 256 489 IPR023451 -
Vra2g0391 536 TIGRFAM thym_sym: thymidylate synthase 255 536 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 Hamap Thymidylate synthase [thyA]. 253 536 IPR000398 GO:0004799|GO:0006231
Vra2g0391 536 Pfam Dihydrofolate reductase 34 209 IPR001796 GO:0004146|GO:0046654
Vra2g0391 536 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 242 536 IPR036926 -
Vra2g0391 536 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 245 536 IPR036926 -
Vra2g0391 536 SUPERFAMILY Dihydrofolate reductase-like 33 209 IPR024072 -
Vra2g0391 536 PANTHER THYMIDYLATE SYNTHASE 1 1 536 IPR045097 GO:0016741
Vra2g0391 536 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0391 Vra-Chr2 3050968 3056187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0391 K13998 - gmx:100786311 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0391 2 3050968 3056187 Vra2g0391 2 3050968 3056187 ECH