Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0368 ATGGCATTCAAACTCAAGCCGCTACCTCTTCCTTCTTATCTTCACTCTTCTCCCCGCCAAAACCCTAATTTCACACTTTCAAACCGTTCTCTTCCTCGATTTTTCTCTGCACATTCTCTTCCTCTCGGTCTCTCTCTCTCAACCACAGCTTCAGCATGCACGTTTCATCGCAATGCCTTGGTAACCGCTCGCGCATTTCGAAGCGATGAAATCACTAGCGAAGGTCAAGAAGAAGAAAAGGAAGAACAAGTGTCGAGGCAGAGTGAGAAAAAGGAACTAGCGAATCAAGGAATATTGGATCAGATAAAAAAAATTGTGATGTTTACAGGTCCAGCAACGGGACTTTGGATATGTGCACCACTCATGAGTCTCATTGATACTGCAATTATTGGTCAGAGAAGCTCCGTTGAACTTGCTGCTCTAGGTCCTGCTACTGTTGTTTGTGATTACTTGAGCTACGTGTTCATGTTTCTATCAATTGCCACTTCCAATATGGTTGCCACTGCCCTTGCTAAACAGGACAAACAAGAAGTGCAACATCACATATCTATCTTGGTTTCTGTTGGGTTATCTTGTGGCGTTATAATGCTTTTGTTCACAAGGCTATTTGGTTCTTCAATAATAACTGCTTTCACTGGGTCAAAGAATGCACACATAGTACCTGCTGCTAGCAGTTATGTAAAGATTCGAGGCTTGGCCTGGCCTGCTTTACTTGTTGGATGGGTTTCTCAAAGTGCAAGTCTTGGCATGAAAGACTCCTTGGGACCCTTGAAGTCCTTGGCTGCTGCTACTGTTCTAAATGTTATTGGTTGCGTAGTTCTGTGCAACTGGTTAGGCTATGGAATTGTAGGGGCAGCGTGGGCTACAATGATCTCACAAGTTGTTGCTGCTTACATGATGATTAAAACTCTAAACAAAAAGGGATATAATGCACTTGCCTTCTCCATTCCGTCAGGGAAGGAACTTCTGATGATATTTGGGCTTGCTGCTCCTGTATTTATGACAATGATGTCAAAGGTGGCTTTCTACTCACTGCTTATATATTTCGCTACATCATTGGGTACACATACAATGGCTGCTCATCAAGTAATGGTCCAAACATATTCCATGTGTACTGTTTGGGGTGAACCTCTCTCCCAAACTGCTCAATCATTTATGCCTGAATTGATATACGGAGCTAATCGCAGCTTATCAAAGGCCCAATTGCTCCTAAGGTCTCTTCTGACAATCGGAATCATACTTGGATTATTGCTAGGGATTGTTGGAACATCGGTTCCTTGGTTATTTCCATACATTTTTACACCTGATCGGATGGTCATTCAGGAGATGCATAAGGTGCTGATTCCATACTTTATAGCACTGTCTATAACCCCCCCTACTCACAGCCTCGAGGGAACATTGCTGGCTGGGCGGGACCTGAGATTTATAAGTTTGTCAATGACTGGATGCTTTTGCGTGGGTTCAATTGTATTATGGGCCATGAGCAGTAGATTTGGTTTACTTGGCTGCTGGTTTTCCCTCGCAATATTTCAATGGGCTCGCTTTTCAATTGCCCTTCAGCGCCTTCTTTCTCCTAAGGGTGTTTTGTACTCAGGAAACACAGATCAGCATGAGCTGCGAAAGCTGAGGACTACTTGA 1638 0.4365 MAFKLKPLPLPSYLHSSPRQNPNFTLSNRSLPRFFSAHSLPLGLSLSTTASACTFHRNALVTARAFRSDEITSEGQEEEKEEQVSRQSEKKELANQGILDQIKKIVMFTGPATGLWICAPLMSLIDTAIIGQRSSVELAALGPATVVCDYLSYVFMFLSIATSNMVATALAKQDKQEVQHHISILVSVGLSCGVIMLLFTRLFGSSIITAFTGSKNAHIVPAASSYVKIRGLAWPALLVGWVSQSASLGMKDSLGPLKSLAAATVLNVIGCVVLCNWLGYGIVGAAWATMISQVVAAYMMIKTLNKKGYNALAFSIPSGKELLMIFGLAAPVFMTMMSKVAFYSLLIYFATSLGTHTMAAHQVMVQTYSMCTVWGEPLSQTAQSFMPELIYGANRSLSKAQLLLRSLLTIGIILGLLLGIVGTSVPWLFPYIFTPDRMVIQEMHKVLIPYFIALSITPPTHSLEGTLLAGRDLRFISLSMTGCFCVGSIVLWAMSSRFGLLGCWFSLAIFQWARFSIALQRLLSPKGVLYSGNTDQHELRKLRTT* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0368 545 MobiDBLite consensus disorder prediction 71 89 - -
Vra2g0368 545 CDD MATE_DinF_like 103 524 IPR044644 -
Vra2g0368 545 Pfam MatE 117 272 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g0368 545 MobiDBLite consensus disorder prediction 71 90 - -
Vra2g0368 545 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 43 535 - -
Vra2g0368 545 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 43 535 IPR044644 -
Vra2g0368 545 TIGRFAM matE: MATE efflux family protein 111 504 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0368 Vra-Chr2 2837457 2844227 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0368 K03327 - gmx:100778295 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0368 2 2837457 2844227 Vra2g0368 2 2837457 2844227 ECH