Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0356 ATGGAAGTTAACCTCTCTCTCAACCGCCACCGCGCCCTCTCTCTCACCTCCCACGCTCCCTCCCTCTCCGCCCTCCGCTCGCACTTCCTCGCCTCCACTCACTCTCTCCGTCTTCCTCCCTCGCCACCCTCCCTTCGCTCCCGGAACAAACGCACCACCAGCCGTAACTTAGGTCTCCTCCGCTTCCACTCTCCGCGCTTCGTCTTCAAGGCCTCCTTCCATTCCCACTCCGTCGTCGTCCTCGTCATCGTCGTCACTCTATCCGCCGTTTCCTGGCTCCACTTCACTCTCACCAAGAAAAAAAACAAGTCTCTTAACCAGACACGGGGGCTTACGAATTTCGCATTATCGCCTCAGGGAACTAATGTTGGGAGTCAGGTCATTGATGGCGAGATTCTTGGTTTTACGGAATTTCAAAGGGATAACACGCTGACTGAGATTGGGAAGTTGAAGGATCACCATGGGGAAGAGTACCGGGTCTTTGAGGAAAACGAGATCCACCTCCCGTTTTTGAAATCTTCAGTGGTACAAGAAGTGGCCATCGCCACCGAGACTTCAGAGTCATCTTCTGTTTTTGACTCTGGTTTGAATAATAATAATAATAATAGTAATAGTTCCAAGGTATTGGATGAGTCTTTTTTATCTGTAGCTTTCTCGTCAACTTCGTTACCACCTCTAGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATGAAGTTAACTCTGATCCCGAGTTGCCTTTAATTGACGTCGAATCCGAGCATACTTCTTCATCTGTTCGCGTAAACAACGCACTGGAGACTGTTGGTGGACATACTAAAGAAAAGGTTGAGCTTGGTGCCATCAATGGTGACGTCCTTTTTGGGGAGTCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGTTAACAAGCCTACAACTGGATCTATGACACCGTTGAGTGGTGTAAAGTCATTATCTCCCCGTGTCTCTTTTATGAATAAAAAACGCTCGCCCTCAGTGATGGGAAATGCCACACTGAAAGGAACAGGGTTATCTACAGATATTCCTCTACAAGATGCAGAACATGTCAAAGGAGCGGCTGACCTTTCCAGTCATAATGGCTACCCTCTGCAACATGTGAGTAAAAACTTGAGGAGGGGCAGAAGCTCTTCAAGAGACAGGGAAAGGACCAACATGGATTACAATAATAACACAGTTTTTCCCCAGGCTCACTCAATGAAGATGCATATTGATCTGAAAAATGATCAAATCATGGTGCCTGATGATCAGAAAAATGATCCTTCAGAGCATCTAAGCAAATATAATAATTTGCTAAAACTTGGGAGGCTACATGAATGTGTAGAAGTGCTTAAACATATGGAAACAAAGGGTTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACACCTGCAAGAAACGAAAGGCCGTTAAAGAAGCTTTTGATTTCATTAAGCTCATTCCAAATCCAACGCTGAGTACATTTAACATGCTTATGTCGGTGTGCGCAAGCTCCCAAGATTCAGAAAGGGCTTTCCATGTTTTGCAGCTTCTTAAGAATGCTCAACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTCTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTATGGGGCACTTATTGATGGCTGCGCTAGAGCTGGGCAAATAGCCAAAGCATTTGGTGCTTATGGAATACTGAGGTCAAAGAATGTGAAGCCAGATCGTGTAGTATTCAATGCACTCATAGCTGCTTGTGCCCAATCAGGAGCTGTAGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAACGCAGCCCATTGACCCTGATCACGTAACAATAGGTGCATTGTTGAAGGCATGCACTAAAGCTGGTCAGGTTGATCGTGCAAAAGAAGTGTACAAGATGGTACAAAAATACAACATAAAGGGATGCCCCGAAGTTTACACCATTGCCGTTAATTCGTGCAGCGAAACAGGGGATTGGGAGTTTGCTATTGCTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGACGAGATATTTCTGAGTGCACTGATAAATGTTGCTGGTAATGCTAAAAATCTGGATGCTGCCTTTGATGTTCTACAAGAAGCCCGTGAAGGAGGAATACGAATTGGAATAACATCATATAGCTCATTGATGGGTGCATGTAGTAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAGTCTCTTAAATTGACAATAACAGTTTCAACAATTAATGCTTTGCTCACTGCACTGTGTGATGGAGATCAATTTCAAAAGGCTTTGGAAGTTTTTTTTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCGATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAAATGCTTCTTTCTGAAGCCAAAAAAGATGGTGTAGTCACTAATCTCATAATTTGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCATTGTTGGTGAGCCTGTTTTATCTTTTCACTCAGAACGGCCACAAGTTGATAATAAATGGACATCGCTGGCCTTAATGGTGTTTCGTGAAACAATTAAAGCTGGTCAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTTCCTTATGATACATCTCTGAAAAATAGACTTGTCGAGAACCTAGGAGTTAGTGCAGATACTTCAAGAGGATCAAACCTCTGTTCATTAATTGATGGATTTGGTGAATACGATCCTCGTGCTTTCTCTATACTTGAGGAATCTGCTTCATATGGAGTTGTTCCATTTGTATCATTTAAAACGAGTCCCATTGTTATTGATGCTAAAGAATTACATGCTTCTACTGCTGAGGTGTACCTCATAACAGTTTTGAAAGGTCTCAAGCATAGACTGGCAGCAGGTGCAAGAGTGCCAAACATAATCATTTTATTGCCTGTAGAGAAAACAGAAGTTGTGTCTCAGAAGGGGGAGAAGATTATTAACCTTGCTGGAAGAGCTGGCCAAGCAATTGGAGCGTTATTGAGGAGGCTTCAGATTCCTCATCAGGGTAATGAATCGAATGGTAAGCTTAGAATTCATGGTGCGGCTCTGAAAAAATGGTTTCAGCCCAAACTTACATCTCCATTTAGCGGAAAACCAGGTGATTGGAATTCCTCCATGTCACGACTGGGTAAAGGTATTAGTCATCAGCAACGAAACATCCGACTTGGCAATCTGTCTTTGGACTAA 3366 0.4293 MEVNLSLNRHRALSLTSHAPSLSALRSHFLASTHSLRLPPSPPSLRSRNKRTTSRNLGLLRFHSPRFVFKASFHSHSVVVLVIVVTLSAVSWLHFTLTKKKNKSLNQTRGLTNFALSPQGTNVGSQVIDGEILGFTEFQRDNTLTEIGKLKDHHGEEYRVFEENEIHLPFLKSSVVQEVAIATETSESSSVFDSGLNNNNNNSNSSKVLDESFLSVAFSSTSLPPLEFAEEMAIQVEESQDEVNSDPELPLIDVESEHTSSSVRVNNALETVGGHTKEKVELGAINGDVLFGESVREGLYMFYEVNKPTTGSMTPLSGVKSLSPRVSFMNKKRSPSVMGNATLKGTGLSTDIPLQDAEHVKGAADLSSHNGYPLQHVSKNLRRGRSSSRDRERTNMDYNNNTVFPQAHSMKMHIDLKNDQIMVPDDQKNDPSEHLSKYNNLLKLGRLHECVEVLKHMETKGLLDMTKVYHAKFFNTCKKRKAVKEAFDFIKLIPNPTLSTFNMLMSVCASSQDSERAFHVLQLLKNAQLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQIAKAFGAYGILRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVDRAKEVYKMVQKYNIKGCPEVYTIAVNSCSETGDWEFAIAVYNDMTQKGILPDEIFLSALINVAGNAKNLDAAFDVLQEAREGGIRIGITSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTINALLTALCDGDQFQKALEVFFEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSEAKKDGVVTNLIICRCIIGMCLRRFEKACIVGEPVLSFHSERPQVDNKWTSLALMVFRETIKAGQKPTSEILSQILGCLQLPYDTSLKNRLVENLGVSADTSRGSNLCSLIDGFGEYDPRAFSILEESASYGVVPFVSFKTSPIVIDAKELHASTAEVYLITVLKGLKHRLAAGARVPNIIILLPVEKTEVVSQKGEKIINLAGRAGQAIGALLRRLQIPHQGNESNGKLRIHGAALKKWFQPKLTSPFSGKPGDWNSSMSRLGKGISHQQRNIRLGNLSLD* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0356 1121 Gene3D Tetratricopeptide repeat domain 633 721 IPR011990 GO:0005515
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Vra2g0356 1121 MobiDBLite consensus disorder prediction 380 402 - -
Vra2g0356 1121 Gene3D Tetratricopeptide repeat domain 437 632 IPR011990 GO:0005515
Vra2g0356 1121 Gene3D Tetratricopeptide repeat domain 722 943 IPR011990 GO:0005515
Vra2g0356 1121 Coils Coil 824 844 - -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 779 813 IPR002885 -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Vra2g0356 1121 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 71 1121 - -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Vra2g0356 1121 Pfam PPR repeat 441 462 IPR002885 -
Vra2g0356 1121 Pfam Pentacotripeptide-repeat region of PRORP 647 789 IPR033443 -
Vra2g0356 1121 Pfam Pentacotripeptide-repeat region of PRORP 476 632 IPR033443 -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 782 814 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 535 568 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 677 710 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 747 776 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 641 672 IPR002885 -
Vra2g0356 1121 TIGRFAM PPR: pentatricopeptide repeat domain 569 602 IPR002885 -
Vra2g0356 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0356 426 849 Glycosyltransferase AT1G05670 24.065 1.83e-32 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0356 - - gmx:100814164 1794.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0356 2 2721183 2731269 Vra2g0356 2 2721183 2731269 ECH