Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0353 ATGGCTATTCAAACGCAGTGGTATCCGAATAATTCTGCTTCTCCATTCTGGAACAATGGTCATTGTGCTCATGGCTTCATCGACTCAGGCATCAGTTTTCAGCACAAGCATCAGCAACAGCTACCAGAACAGCATTTGGGAGAGTTATGCAATGGGAGTCAGGGAGGGAACTTTGATCCAAATCTTCATGTCTGTAGTTCAAAAGGGATGAATTCTCCTGTGTTTGCTGTTCAGTTTCAGAAACAATGGGAAGAGATTGATCAGTATATGAAATCTGAGGATGAGAAATTGAGATATATGATAAAAGAGCACGGGAAACAACAGGTGATGGCATTGTTGAAAAAACTGGAAACTCGTACTCTTCATGTCCTGAGGGAAAAAGATGTAGAAATTGCACAAGCCATGAAGAGAAGGTTAGAGTTAGAAGAGTATTTGAGAAAGTTAGAGGCGGAAAACAACAGATGGCAGAGGTTGGCTCAGGAGAAGGAAAACATGGCATTGTCTCTATACAAAACGCTGGAGGAAATGACAGAAGGTGGAAACTTTTTGAACAATGGGGCAGTGGCAAATGATGCAGTGTCGTGCTGTGGCGAAACTGGAGGAACAGAAGAGAGGGAAGAAGAAGGAACTGCAGAAAAAGGTTTAGAATGTGGAGGGGTGAATGAAGTTGAACAGATTACGAGAAAAGGAGGAGTAATGCTTTGTAAAAGCTGCCATTCTAGGAGCTCGTGCTTTCTGTTCCTCCCATGCAGGCACCTTTCTTCCTGCAAAGTTTGCAACGCTTCCCTCGAGGCTTGCCCCGTCTGCAGAACACCAAAGAAGGCTACCATTGAGTTGAGACTTTGA 846 0.4385 MAIQTQWYPNNSASPFWNNGHCAHGFIDSGISFQHKHQQQLPEQHLGELCNGSQGGNFDPNLHVCSSKGMNSPVFAVQFQKQWEEIDQYMKSEDEKLRYMIKEHGKQQVMALLKKLETRTLHVLREKDVEIAQAMKRRLELEEYLRKLEAENNRWQRLAQEKENMALSLYKTLEEMTEGGNFLNNGAVANDAVSCCGETGGTEEREEEGTAEKGLECGGVNEVEQITRKGGVMLCKSCHSRSSCFLFLPCRHLSSCKVCNASLEACPVCRTPKKATIELRL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0353 281 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 280 IPR017066 -
Vra2g0353 281 Gene3D Death Domain, Fas 115 243 IPR011029 -
Vra2g0353 281 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 280 - -
Vra2g0353 281 Gene3D - 244 277 - -
Vra2g0353 281 Gene3D - 69 114 - -
Vra2g0353 281 Coils Coil 131 165 - -
Vra2g0353 281 Pfam Zinc finger, C3HC4 type (RING finger) 234 274 - -
Vra2g0353 281 PIRSF SBP1_RNase_bind 28 281 IPR017066 -
Vra2g0353 281 ProSiteProfiles Zinc finger RING-type profile. 235 270 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0353 Vra-Chr2 2701680 2703379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0353 234 271 Miscellaneous Gene Families AT2G21380 42.105 6.74e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0353 K19042 - gmx:100789863 393.275