Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0351 ATGATAAATATTCGGACTTTTATACTCAGTTTTTCAAACTTTAAAATGGGCTGGGGGAAGTTGCATAGCCCAGCCCAAGCCCATTTTCACCGTACAAGGGGACTATTTAATGCCGTGTTTCCCTCCGAAAGTGGCATTGGCGCGCGAGGGTTTGAAGTTTTGGCGCAGAAAAAAATGGCGGAAGAGTATAATGAAGGTGAAGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTGTTGTACGATTTGTTCATTTCTCATCCTCTTCAATGGCCCTCTCTCACCGTTCACTGGCTTCCTTCCTCTCCCCAACCCCACTCCCACCCTTCCTTCAATGTCCACAAACTCCTTCTCGCTACTCACACTGCCCAGGGCGAACCCAATTTCCTCATGCTCGGCGACGCATCCCTCCCCGCCGATACCTCACAACCAATCGTTGCCACCGACCCTGACGACCCTGTTCTCCCCAAGGTAGAAATTTCCCAAAAGGTTGCTGTTGACGGGGAGGTGAATCGAGCGCGTTGTATGCCGCAGAACCCTACTATTGTTGCTGCGAAGACATGTAATTCCGAGGTATATGTGTTTGATTTCAACAAGCAGCGTGGGAGCGAGTTTGCCCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGCTATGGTTTGTCTTGGAGCCCTTTCAAGAGTGGGTATCTTTTGAGTGGTTCGCATGACCATAAGATTTGCTTGTGGGACGTGCCTGCTGCATCTCAAGAGAGTGTGATTGATGCAGTTCATGTTTACGAGGGTCATGAGAGTGTGGTTGAAGATGTGTCCTGGAATATGAAGGATGAGAATATTTTTGGATCTGTAGGAGATGACTTTAAATTGGTCATTTGGGACTTACGGACTAACAAACCCCAACAATCAGTCAAACCACATGATAACGAGGTTAACTTTCTTTCATTCAGTCCATATAACGAATGGATTTTGGCTACAGCATCATCAGATACAAGTGTTGGTCTATTTGACACACGGAAGCTGGCAATTCCACTACATTTTTTAAGTAGCCACACCGATGAAGTATTCCAGGTTGAGTGGGATCCTAATCACGAGACTGTGTTGGCATCATCTGGCGCTGACAGACGGCTGATGGTTTGGGATCTTAGCAGGATCGGAGATGAGCAGATAGAGGGAGATGGTGAGGGTGGCCCTACCGAATTACTCTTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACATAAATCAGCCATGGGTTATCTCAAGTGTAGCTGAGGATAATTCTTTCCATGTATGGCAAATGGCGGAGAGCATTTACAATGATGGAGACGATGACAACATGTGGACGGCCAATGATTAA 1377 0.4655 MINIRTFILSFSNFKMGWGKLHSPAQAHFHRTRGLFNAVFPSESGIGARGFEVLAQKKMAEEYNEGEVEEEFSVWKKNTPLLYDLFISHPLQWPSLTVHWLPSSPQPHSHPSFNVHKLLLATHTAQGEPNFLMLGDASLPADTSQPIVATDPDDPVLPKVEISQKVAVDGEVNRARCMPQNPTIVAAKTCNSEVYVFDFNKQRGSEFAPDLRLRGHDKEGYGLSWSPFKSGYLLSGSHDHKICLWDVPAASQESVIDAVHVYEGHESVVEDVSWNMKDENIFGSVGDDFKLVIWDLRTNKPQQSVKPHDNEVNFLSFSPYNEWILATASSDTSVGLFDTRKLAIPLHFLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLSRIGDEQIEGDGEGGPTELLFSHGGHKGKISDFSWNINQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTAND* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0351 458 Gene3D - 52 456 IPR015943 GO:0005515
Vra2g0351 458 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 60 455 - -
Vra2g0351 458 PANTHER WD40 REPEAT FAMILY 60 455 - -
Vra2g0351 458 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 70 140 IPR022052 -
Vra2g0351 458 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Vra2g0351 458 ProSitePatterns Trp-Asp (WD) repeats signature. 233 247 IPR019775 -
Vra2g0351 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 304 IPR001680 GO:0005515
Vra2g0351 458 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Vra2g0351 458 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Vra2g0351 458 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Vra2g0351 458 Pfam WD domain, G-beta repeat 403 438 IPR001680 GO:0005515
Vra2g0351 458 Pfam WD domain, G-beta repeat 345 382 IPR001680 GO:0005515
Vra2g0351 458 Pfam WD domain, G-beta repeat 259 295 IPR001680 GO:0005515
Vra2g0351 458 Pfam WD domain, G-beta repeat 214 246 IPR001680 GO:0005515
Vra2g0351 458 Pfam WD domain, G-beta repeat 300 338 IPR001680 GO:0005515
Vra2g0351 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 247 - -
Vra2g0351 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 384 IPR001680 GO:0005515
Vra2g0351 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Vra2g0351 458 SMART WD40_4 399 439 IPR001680 GO:0005515
Vra2g0351 458 SMART WD40_4 342 382 IPR001680 GO:0005515
Vra2g0351 458 SMART WD40_4 206 246 IPR001680 GO:0005515
Vra2g0351 458 SMART WD40_4 255 295 IPR001680 GO:0005515
Vra2g0351 458 SMART WD40_4 298 338 IPR001680 GO:0005515
Vra2g0351 458 SMART WD40_4 158 198 IPR001680 GO:0005515
Vra2g0351 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 255 IPR001680 GO:0005515
Vra2g0351 458 SUPERFAMILY WD40 repeat-like 170 440 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0351 Vra-Chr2 2687944 2691230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0351 230 440 Miscellaneous Gene Families AT5G08390 23.223 3.39e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0351 K10752 - gmx:100791834 728.783