Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0346 ATGTCGACAATCATACTTGCTTTGATTACCATGCTTTTCATCACTGTTACCAGCGCAGAGAAGAATAAGGAAGTCACATACGATAGCAGGTCGCTCATCATCAATGGAAAACGGGAGCTTCTCTTCTCTGGTTCCGTCCATTACACTCGAAGCCCCCCTGAGATGTGGCCGCTGATTATTGACAAAGCTAGACGTGGAGGTTTGAACGTGATTCAAACGTACATCTTCTGGAACGTTCATGAGCCTGTAGAAGGCAAGTTCAAAGTGGATCCGGAGTATGATTTCGTGAAGTTCATGCAGCTATGTCATGACAAAGGAATGTATGTTACCCTCAGGGTTGGACCTTTCATCCAAGCCGAATGGAATCACGGAGGACTTCCGTATTGGCTAAGAGAGGTTCCTGATATCATATTCCGTTCAAACAATGAAGCCTTTAAGAAATACATGAAAGAATATACAAAAACTGTCATAAAATTATGTCAAGACGCGAAGCTCTTCGCTCCCCAAGGAGGCCCCATCATCTTGGCACAGATCGAGAATGAGTACAACCATATCCAACGTGCTTTTAGAGAGGACGGAGATAAGTACGTCCAATGGGCTGCAAATCTGGCAGTTTCACTGAATGTTGGAGTTCCATGGATCATGTGCAAACAGACGGATGCTCCTGATCCAGTGGTTAATGCATGCAATGGAAGACACTGTGGTGATACCTTTGCAGGCCCTAACAAACCCGACAAGCCTGCCCTGTGGACTGAAAACTGGACTGCTCAGTATAGGGTGTTTGGAGATCCACCATCGCAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGTTTCTTCTCTAAGAATGGCTCTTTGATGAACTACTATATGTACTATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCAGTACAACACGATATTACGATGAAGCCCCGCTTGATGAATTCGGTTTGCAGAGAGACCCAAAATGGAGTCACCTGAGAGACGTGCACAAGGCATTGACCCTATGCAGGCAGTCCCTGTTTGGTGCTGAATCGGTGGTCACAAAAGTTAACCAGCATCACGAGATTATAGTTTTCGAGAAGAAAGATAGTCACTTATGTACTGCTTTCATCACTAACAACCACACCAAAAATCCAGCCACCATAAAGTTCAGAGAAACGAGCTATTTTCTGCCACCACGTTCCATCAGTATCCTCCCTGACTGCAAGACTGTGGTCTTCAACACCCAAAATGTTGCTTCACAACATAATTCAAGGAACTTCAAGAAGTCAAAAAAGGCCAACAATTTCAAGTGGGAGGTGTTTACTGAAACCATTCCAGTCGCCAAGGATATAAAAGTTAGTGGAAATGTTCCCGCTGAACTTTATAGCTTGCTTAAAGACACCACAGACTATGCATGGTACACCACCAGCGTGGAATTGGGTCCGGAAGACTTGCCAAAGAAGAGTGACGTATCCACCGTTATTCGTATTTTGAGTCTTGGCCATTCTCTGCATACCTTTGTAAATGGAGAATTTATTGGAACAAATCATGGTACTCATGAAGAGAAAGGTTTTGAATTCCAGAAAGCTGTACACTTCAAGGTTGGAGTTAACAACATAGCTATCTTGGCTAGCACTATTGGACTCCCTGACAGTGGTGCATACATGGAGCACAGGTATGCTGGACCAAAGTCTATACTCATCCTTGGTCTTAACTCTGGAAAAATTGATCTGACTTCTAATGGTTGGGGCACTAAGGTTGGAATCCAAGGAGAGGAGTATGCCGTTTTCACTGAGGAGGGATCAAAGAAAGTAGAATGGAAAGAGGTGACCAAGGGAAATGGAAAGTCTCTCTCGTGGTATAAGACAACTTTTAGAAAACCAGAGGGAAGGGATCCTGTTGCCATAAAGATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGTAAAAGCATCGGTCGTCATTGGATGAGTTTCCTCTCTCCCCTTGGAAGCCCTACTCAGTCAGAGTACCACATCCCAAGAACTTACTTAAATGAAAAAGAGAATCTCCTTGTGATATTTGAGGAAGAGCAAGCAGACCCAAGTCAGATTGAGATTCAAACGGTTGACAGAGATACAATATGCAGTATTATCACAGAGAATCACCCTCCCAACGTCAATTCCTGGGCATCTAAGGGTGGCAAGTTCCAGACTGTTGTGGAAAATCCGAAGCCAACGGCTACAGTCCAATGTCCAAACCACAAAAGCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCAACGGGTGTCTGTGGAGAGCTTATTAAGGGAAAATGTGATGCCTCTGCCACCAAGCAGATTGTTGAACAGCAATGCATGGGAAAACCATCATGCTCGATTCCACTTGAAGCGTCAACCTTCACCCAGGGAAAAGATCCTTGCCCAGATGTGTCGAAGACTCTTGCAATTCAAGTGAAGTGTGACTTATAG 2475 0.4444 MSTIILALITMLFITVTSAEKNKEVTYDSRSLIINGKRELLFSGSVHYTRSPPEMWPLIIDKARRGGLNVIQTYIFWNVHEPVEGKFKVDPEYDFVKFMQLCHDKGMYVTLRVGPFIQAEWNHGGLPYWLREVPDIIFRSNNEAFKKYMKEYTKTVIKLCQDAKLFAPQGGPIILAQIENEYNHIQRAFREDGDKYVQWAANLAVSLNVGVPWIMCKQTDAPDPVVNACNGRHCGDTFAGPNKPDKPALWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLMNYYMYYGGTNFGRTSSAFSTTRYYDEAPLDEFGLQRDPKWSHLRDVHKALTLCRQSLFGAESVVTKVNQHHEIIVFEKKDSHLCTAFITNNHTKNPATIKFRETSYFLPPRSISILPDCKTVVFNTQNVASQHNSRNFKKSKKANNFKWEVFTETIPVAKDIKVSGNVPAELYSLLKDTTDYAWYTTSVELGPEDLPKKSDVSTVIRILSLGHSLHTFVNGEFIGTNHGTHEEKGFEFQKAVHFKVGVNNIAILASTIGLPDSGAYMEHRYAGPKSILILGLNSGKIDLTSNGWGTKVGIQGEEYAVFTEEGSKKVEWKEVTKGNGKSLSWYKTTFRKPEGRDPVAIKMTGMGKGMIWINGKSIGRHWMSFLSPLGSPTQSEYHIPRTYLNEKENLLVIFEEEQADPSQIEIQTVDRDTICSIITENHPPNVNSWASKGGKFQTVVENPKPTATVQCPNHKSIKAVEFASFGDPTGVCGELIKGKCDASATKQIVEQQCMGKPSCSIPLEASTFTQGKDPCPDVSKTLAIQVKCDL* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0346 824 Gene3D - 414 560 - -
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 249 264 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 286 301 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 615 629 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 PRINTS Glycosyl hydrolase family 35 signature 642 658 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 Pfam Beta-galactosidase jelly roll domain 608 688 IPR025300 -
Vra2g0346 824 Pfam Beta-sandwich domain in beta galactosidase 349 417 IPR041392 -
Vra2g0346 824 Pfam Galactose binding lectin domain 744 822 IPR000922 GO:0030246
Vra2g0346 824 SUPERFAMILY Galactose-binding domain-like 580 729 IPR008979 -
Vra2g0346 824 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 18 819 - -
Vra2g0346 824 SUPERFAMILY Galactose-binding domain-like 401 562 IPR008979 -
Vra2g0346 824 Gene3D Glycosidases 21 341 - -
Vra2g0346 824 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Vra2g0346 824 Gene3D - 729 824 IPR043159 -
Vra2g0346 824 Gene3D - 585 715 - -
Vra2g0346 824 ProSiteProfiles SUEL-type lectin domain profile. 735 823 IPR000922 GO:0030246
Vra2g0346 824 Pfam Glycosyl hydrolases family 35 31 337 IPR031330 -
Vra2g0346 824 PANTHER BETA-GALACTOSIDASE RELATED 18 819 IPR001944 GO:0004553|GO:0005975
Vra2g0346 824 SUPERFAMILY (Trans)glycosidases 21 341 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0346 Vra-Chr2 2660584 2665133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0346 22 822 Glycoside Hydrolase AT4G35010 57.745 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0346 - - gmx:102663614 1312.75