Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0344 ATGGGTTTCTTTAGTGCCATTTTGGGGTTTTTTGGATTCGGGGTTGGGATTTCGATTGGCCTTGTGGCTGGCTATTTTCTCTTCATCTACTTTCAACCCACTAATGTTGAGGATCCTGAAATCAAACCAATGGTGGAGCAAGAGCAAGAGACTTTGCAGCGGATGTTTCCGGAGATTCCTGTTTGGATAAAAAGTCCGGATTTCGATCGGCTGGACTGGCTCAACAAGTTTTTAGAGTACATGTGGCCGTATCTTGATAAGGCAATTTGCAAGACTGCCAGGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCTGTTGAGTTTGAAACACTAACGCTGGGTTCACTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGACGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTTACTGTCTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTAGATTTGCAAGCTTTCCTATTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGTTTTCCTTGCTTTGCCAACATATATGTCTCCCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCAGGTGTCTATAGGATCGTTCAGGATATTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCTTGGAAGTTCCAGTTTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTTCAGGCAATGAAGCTAAAGAAAAAAGATCTTCTTGGTGCATCTGACCCCTATGTAAAGCTAAAGCTTACTGATGATAAATTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATATGATAGTTAAAGATCCTGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAACATGATAAGATGGGTATGAATGTGATATCTTTAAAAGAAGTTTCCCCCGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAACATGGATCCCAATGATGTCCAAAATGAGAAGTCACGTGGGCAGATTGTTTTAGAACTGACATATAAACCCTTCAAGGAGGAGGATTTGGCCAAGGGGTTTGAAGAGACGCAGACAGTGCCAAAAGCTCCTGAAGGTACTCCAGAAGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTCGAAGGGAAGTATCACACTAATCCACATGTACGACTTATATTCAGAGGGGAAGAGAAAAAAACAAAGCGCATTAAAAAGAATAGGGATCCAAGATGGGAAGATGAGTTCCATTTTATGGTAGACGAGCCTCCCACCAATGATAGATTACACGTGGAGGTTCTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCACTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATTAATGAGAGGTACCATCTGATAGACTCCAAGAATGGTCGCCTGCAGGTAGAGTTGCAGTGGAGAACCTCACAAGCAGGATGA 1623 0.4159 MGFFSAILGFFGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPMVEQEQETLQRMFPEIPVWIKSPDFDRLDWLNKFLEYMWPYLDKAICKTARNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQAFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQDIIKDQVANMYLWPKTLEVPVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTDDKLPSKKTTVKHKNLNPEWNEEFNMIVKDPDSQVLEINVYDWEQVGKHDKMGMNVISLKEVSPEEPKRFTLDLLKNMDPNDVQNEKSRGQIVLELTYKPFKEEDLAKGFEETQTVPKAPEGTPEGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFHFMVDEPPTNDRLHVEVLSTSSRNLLHQKESLGYIDINLGDVVANKRINERYHLIDSKNGRLQVELQWRTSQAG* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0344 540 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Vra2g0344 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Vra2g0344 540 CDD C2 262 364 - -
Vra2g0344 540 Gene3D C2 domain 256 410 IPR035892 -
Vra2g0344 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vra2g0344 540 Gene3D C2 domain 419 537 IPR035892 -
Vra2g0344 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Vra2g0344 540 SMART C2_3c 419 517 IPR000008 -
Vra2g0344 540 SMART C2_3c 261 361 IPR000008 -
Vra2g0344 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Vra2g0344 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Vra2g0344 540 PRINTS C2 domain signature 277 289 IPR000008 -
Vra2g0344 540 PRINTS C2 domain signature 304 317 IPR000008 -
Vra2g0344 540 PRINTS C2 domain signature 326 334 IPR000008 -
Vra2g0344 540 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Vra2g0344 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Vra2g0344 540 Pfam C2 domain 260 359 IPR000008 -
Vra2g0344 540 Pfam C2 domain 419 520 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0344 Vra-Chr2 2634296 2641004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0344 255 527 Lipid Metabolism Gene Families AT3G61300 27.586 1.60e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0344 - - gmx:100781189 1041.57