Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0334 ATGGATCTAACACGACTCTCATGTCTCACTCTCGTTGTTCTGTTCTTCACTACCCCAGGGGTTATGGCTGCCACCTTCACATTCGTTAACCGATGCGATTACACGGTGTGGCCTGGCATTCTCGCAAATGCCGGTAGCCCACCACTCCAGAGCACCGGCTTCGAGCTTCCCAAGGACACTTCTCGCACCTTCCAAGCTTCCACCGGCTGGTCCGGTCGCTTCTGGGCCCGAACCGGTTGCACCTTTGACGGATCCGGATCCGGTTCCTGCCTCACGGGCGACTGCGGCTCCGGCCAAGTCGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCCACTCTCGCTGAGTTCACGCTGGGCACCGGAGGCCAAGACTTCTACGACGTCAGTCTCGTCGACGGCTACAACCTTCCCATGATCGTGGAGGGTACTGGCGGCTCGGGTCTATGTGCCACTACGGGCTGCACGTCGGATCTGAACCAGCAATGCCCGGCGGAGCTGAGAGCCTCCGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGTAGCCCCGAGTACTGCTGCAGCGGCGCGTATGGCTCACCCGCAACCTGTAGGCCCTCCATTTACTCGGAGATGTTCAAGGCAGCTTGCCCCAGATCGTATAGCTACGCTTACGACGACGCTACCAGTACTTTTACGTGTACCGGCGCTGATTACACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCGTCACGAGATACCACCACCAACCCCATGCCTTCAACATCATCATCATCATCACAAGGGTCAGGGACAGTGACAGGAACAGAAACAGGAGCAGGAATGGGATCCGAAGGAGGAGCGGTGGTGTACACGGGTGCGGACAATGGAGTTGTGTATAACTCCGTTACGGATTCCGGGTCAAGTACAGGATCCGGAGGAGAAGCAATGCTGGCAGATGGGTCATATTTAGCTGGGTTGGCCATGGGAGAGTCCTCCCCCAGAAGAACAGTTTCCATGGCGTTTGTGTCCTCAGCTAGCTTTTTTCTTATTTTCACCTTGCTTTAG 1056 0.572 MDLTRLSCLTLVVLFFTTPGVMAATFTFVNRCDYTVWPGILANAGSPPLQSTGFELPKDTSRTFQASTGWSGRFWARTGCTFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCATTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTTTNPMPSTSSSSSQGSGTVTGTETGAGMGSEGGAVVYTGADNGVVYNSVTDSGSSTGSGGEAMLADGSYLAGLAMGESSPRRTVSMAFVSSASFFLIFTLL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0334 351 Pfam Thaumatin family 30 239 IPR001938 -
Vra2g0334 351 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vra2g0334 351 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Vra2g0334 351 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Vra2g0334 351 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Vra2g0334 351 PRINTS Pathogenesis-related protein signature 229 238 IPR001938 -
Vra2g0334 351 CDD TLP-PA 25 238 - -
Vra2g0334 351 SUPERFAMILY Osmotin, thaumatin-like protein 24 240 IPR037176 -
Vra2g0334 351 Gene3D Thaumatin 24 239 IPR037176 -
Vra2g0334 351 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Vra2g0334 351 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 12 265 - -
Vra2g0334 351 SMART tha2 26 239 IPR001938 -
Vra2g0334 351 MobiDBLite consensus disorder prediction 239 275 - -
Vra2g0334 351 ProSiteProfiles Thaumatin family profile. 23 239 IPR001938 -
Vra2g0334 351 PANTHER OS03G0233200 PROTEIN 12 265 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0334 Vra-Chr2 2553598 2556054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0334 6 253 Receptor kinase-like Gene Family AT5G38280 48.062 2.63e-80 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0334 - - gmx:100801173 575.859