Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0333 ATGGCTCGCTGGCTTCTCTTTCTCATCATTCTCAGCCTTCTCGCATTAACTTTCCTCTCAGAGGTACAATCAGCATCCTTCAAGATTGTGAACAAGTGTCGCCACACGATATGGCCGGGATTACTCTCCGGCGCCACCTCGCCGCCGCTTCCCACCACCGGATTCGCCCTCCTCAGCGGAGAATCCAAGACGTTAAAAATCCCGAAATCTTGGTCTGGTCGGATATGGGCACGGACCCTCTGCGGTCAAGACTCCGACGGAAAGTTCTCTTGCGGCACCGCCGACTGCGGCTCCGGCAAAGTAGAGTGCGTCGGCGGTGCCAAGCCGCCGGCGACATTGGCAGAGCTCACCCTGAACGGCGCAGACGGGCTGGACTTCTACGACGTAAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTGGCGAAGGACGGCACCAGGGGCGGGTGCAGCGCCACGGGGTGTCTCGTCGACCTCAACGGCGGGTGTCCAGCGGAGCTAAGGGTGGCACGTGTGAACGGCAGCCGCAAGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGTGATCCTAGTTTTTGCTGCAGCGGCGCGTACTCGACGCCTGACACGTGTGGTCCCTCTCCATATTCTCTGTTCTTCAAGCACGCATGCCCACGCGCGTATAGCTACGCGTATGATGACAAGACGAGCACCTACACATGTGCTTCCGCGAACTATTTGATCATTTTCTGCCCCTTGCCCTACACCAGCCAGAAAGTTTTGGGAGCACGAAAAGATGGGGCACAACTTCCTCTGGTAAACAAAACTATGATGTACTTATCAAGGCTTCAGTCAAGTGGTTCTTCGCCATTAGTTGTTGTTCAAACGCAGAGCATAGCTTATGTTGCCTCTGTTTTAGTGGCTCTGTTCCTGTTCTGCCCTCTATGA 933 0.5627 MARWLLFLIILSLLALTFLSEVQSASFKIVNKCRHTIWPGLLSGATSPPLPTTGFALLSGESKTLKIPKSWSGRIWARTLCGQDSDGKFSCGTADCGSGKVECVGGAKPPATLAELTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTRGGCSATGCLVDLNGGCPAELRVARVNGSRKSVACRSACEAFGDPSFCCSGAYSTPDTCGPSPYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKVLGARKDGAQLPLVNKTMMYLSRLQSSGSSPLVVVQTQSIAYVASVLVALFLFCPL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0333 310 PIRSF PR5 1 300 IPR001938 -
Vra2g0333 310 CDD TLP-PA 26 246 - -
Vra2g0333 310 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 7 258 - -
Vra2g0333 310 Gene3D Thaumatin 25 247 IPR037176 -
Vra2g0333 310 PANTHER OS03G0233200 PROTEIN 7 258 IPR001938 -
Vra2g0333 310 Pfam Thaumatin family 31 247 IPR001938 -
Vra2g0333 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Vra2g0333 310 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Vra2g0333 310 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vra2g0333 310 SMART tha2 27 247 IPR001938 -
Vra2g0333 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vra2g0333 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vra2g0333 310 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vra2g0333 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vra2g0333 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0333 Vra-Chr2 2544439 2546705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0333 5 247 Receptor kinase-like Gene Family AT5G38280 50.407 6.75e-84 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0333 - - gmx:100802252 564.688