Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0328 ATGCCAATGCCATCTCCCTCGTTCCCAACCCGGAAATCCCACCCCAACATCTGCATCGTCAAACCCCTTTTCTCCAGCACTTCCCTATCCGACGCCGTTTCTTCTCTCGACCTATTGCGCCTCAAGGGCATTCGCTTACCCTCTCACATTCTCGCCACCCTCTTGCGCCACTGCTCCAAAACCAGGTCTTTTCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGCTTCAAACGCCCCCCAACGCTTCTAGCCAACCACTTGATCGCTATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCCAGGTGTTCGACAAAATGGACGATAGAAATTTGTTTACTTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGCATGATGAAGCAGGCTAGGAGCATATTCTATCGAATGCCTCACAAGGATTATGTGTCTTGGAATTCAATGGTGTCTGGGTATGCGCATCGTGGCAGATTTGACGAGGCTTTGAGATTTTATCGACGGTTTAGAAGATTGGATGTGGGGTATAACGAGTTTAGTTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGAATTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTAGTAGTTGGGTTTTTGTCCAATGTGGTTATATCCAGCTTAATTATTGATGCTTATGCAAAATGTGGAAAGATGGAAGATGCAAGAAGATTATTTCATGACATGCCTGCAAGGGATGTTCGTGCATGGACAACACTAGTTTCGGCTTATGCCGCATGGGGCGACATCGAATCGAGCGCCGAGTTGTTTAGTCAGATGCCTAAAAGCAACCCCTGTTCGTGGACATCTTTGATTAGAGGTTACTCTAGAAATGGTATGGGTCATGAAGCACTTGGTGTGTTTAGAGAGATGATCAAGCACCAAGTTAGACCTGATCAATTTACGTTCAGTACTTGCCTATTAGCTTGTGCTACTATTGCTTCACTGAAGCATGGTAAACAAATACATGCGTTTTTGGTGCGAAATAGCATCAAACCTAATACTGTTGTAATTAGTGCTATTGTTGGCATGTATTTGAAGTGTGGAAGGTTGGAAACTGCCAGGCGAGTCTTTAATTCCACTAGAAATAAGCAGGATGTAGAGTTGTGGAACACGATTTTATCAACACTGGTCCACTGTGGCTATGTCACAGAAGCAATTATGATGCTTTATAATATGCTAAGATCAGGAGTGAAGCCAAATAGGACCACTTTTGCCGTCATTTTGAATGCTTCTTGTCATTCTGGTCTTGTACAGGAAGGGCTTCGGTTATTCAAGTCCATGCCTAGTGAGCATGGTGTCGTCCCTGACCAACAGCAGTACGCAGGCTTAACTAATCTTTTTTATGAAGCTGGGTGTTTTAATGAATCAGTGAATGATCTGCAGATGATGGATTCTAAGCCAGATGACCATGTATTGTGTCGATTGCGTGGGAATATAGATCATGGGAGAGAAGTCGCTGTACTCCTTATCAAATTGCAGCCACAATCCTTTGAAACCTACAAATTACTTTCAAGTATTTATGCTGCACTTGGGAAATGGGATTTGGTTGAGAAAATAAGACATATTTGTCGTGAGAGACAGGGGAGAAAAGAGCAGATCATTAGTTGA 1650 0.4382 MPMPSPSFPTRKSHPNICIVKPLFSSTSLSDAVSSLDLLRLKGIRLPSHILATLLRHCSKTRSFREGKLIHLHLKLTGFKRPPTLLANHLIAMYFSCGDFVQARQVFDKMDDRNLFTWNNMLSGYAKLGMMKQARSIFYRMPHKDYVSWNSMVSGYAHRGRFDEALRFYRRFRRLDVGYNEFSFASVLIVSVKLKEFELCRQIHGQVLVVGFLSNVVISSLIIDAYAKCGKMEDARRLFHDMPARDVRAWTTLVSAYAAWGDIESSAELFSQMPKSNPCSWTSLIRGYSRNGMGHEALGVFREMIKHQVRPDQFTFSTCLLACATIASLKHGKQIHAFLVRNSIKPNTVVISAIVGMYLKCGRLETARRVFNSTRNKQDVELWNTILSTLVHCGYVTEAIMMLYNMLRSGVKPNRTTFAVILNASCHSGLVQEGLRLFKSMPSEHGVVPDQQQYAGLTNLFYEAGCFNESVNDLQMMDSKPDDHVLCRLRGNIDHGREVAVLLIKLQPQSFETYKLLSSIYAALGKWDLVEKIRHICRERQGRKEQIIS* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0328 549 Gene3D Tetratricopeptide repeat domain 282 428 IPR011990 GO:0005515
Vra2g0328 549 Gene3D Tetratricopeptide repeat domain 23 177 IPR011990 GO:0005515
Vra2g0328 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 449 IPR002885 -
Vra2g0328 549 Gene3D Tetratricopeptide repeat domain 190 279 IPR011990 GO:0005515
Vra2g0328 549 Pfam PPR repeat family 379 427 IPR002885 -
Vra2g0328 549 Pfam PPR repeat family 279 324 IPR002885 -
Vra2g0328 549 SUPERFAMILY TPR-like 93 283 IPR011990 GO:0005515
Vra2g0328 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vra2g0328 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vra2g0328 549 SUPERFAMILY TPR-like 154 526 IPR011990 GO:0005515
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 222 247 IPR002885 -
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 249 276 IPR002885 -
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 116 145 IPR002885 -
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 147 177 IPR002885 -
Vra2g0328 549 TIGRFAM PPR: pentatricopeptide repeat domain 382 414 IPR002885 -
Vra2g0328 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Vra2g0328 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vra2g0328 549 Pfam PPR repeat 147 175 IPR002885 -
Vra2g0328 549 Pfam PPR repeat 116 144 IPR002885 -
Vra2g0328 549 Pfam PPR repeat 220 245 IPR002885 -
Vra2g0328 549 Pfam PPR repeat 249 276 IPR002885 -
Vra2g0328 549 Pfam PPR repeat 88 114 IPR002885 -
Vra2g0328 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 177 546 - -
Vra2g0328 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0328 Vra-Chr2 2514928 2517006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0328 120 545 Glycoside Hydrolase AT3G49170 27.918 2.05e-53 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0328 - - gmx:100798659 853.588