Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0318 ATGCCGAAGCCTTGTGACTTGCAAATCAACATCGATGGTCAGCAGATATTTCTCTTGAAGGAGAAGGTTATTTCAAAATACTGTGGAGGGTTGAAGAAAATCTTGAATCACAGAAAGAGAAGAGGTCATGTGAAGCAGGAGTTGGGGATTAGGATCAATGATTTTCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAATGTTCTGTTACAATAATGGAAAAATACAAATCACTGAAGCTAATGTGTGTCTCCTACACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGTACTCAGCAACAATCTGTTGCAGCAAACAGAAACTTTTCTCCAGGGAATCTTCAACTGGAAATGGAGTGACACACTTATGATTCTCAAGAGTTGCGAGCGGTTTCATGCATATGCAGATGGGTATGGTCTTTTGGAGAAGATCATTAGTGTCTTAGCCAAGTTTGTGCAGAATTCAGATTCAAACCTCCTCATGTCCTCACCTTCAGCATCAGCATCATCATCATCTTCTTCACCAGAAACCAATTCTGCTAAAAGATTCTCTTTTTCATCCAAGAAAACTACCCCAGAAAAAATAAAGTCAACTTTGTCACGCAAGGCATGGTGGTTTGATGATTTGGCAACTTTACCACCAAATATCATCGAGAAACTTGTCCAGGCTACAGGAGCATATAAAGCTGATAACAAAGATTTAGTCCTCACAAGATTTCTGCTGCATTATCTGAAACTAGCTACTCAAACCAGAGTAGTTAATTGCAGCAACAACAGTGAATATGCTGCTCTTGCAGAAACTGCAACTTATGGAGTCATATCAGTTGGAAAAAAGACATTTTCTTGCAGAGGGCTTTTTTGGGTTTTAAGGATTGTATCAAAGTTTGGGTTGGGTAGAGATGTTAGAACAGAATTGGAGAAACTGATTGGTGGGGTGATTGAGCAAGCTACACTGGATGATCTTCTGGTTTCTGGGCATGACATGGGAGTTTATTATGATATTAATTTGGTGATAAGATTGGTCAGGGTGTTTGTTGATATGAATGGCTCTGATGAAGGAATGTGTTTACAGAAACTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGATCAGAACCTCAAGATCTCTAAGTTTCTTGGAGTAGCAGAATGCTTGCCAGACTCAGCAAGGGATTGTTATGATGGAGTCTATAAAGCCATTGACATCTATCTTCAGTCTCATCCAATTATCACATTTGAGGAAAGATCGAGACTGTGTAGATGTCTTAATTACACCAAGCTCACCTTTGAAGCAAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCCAGGGTTGCAATGCAGGCTCTTATTTCTCAACAATCAAAAGTTCCAACAATTGACTATGTAACTGAGAGTCCAAGAGTGAAACCTTCCCAATTAGTTTTGTACAATGGAAAAACCAGAAACAGCTTCACCAAAGAGAAGAAAGAAATGGAACTCAACATAGACAAGATGCAATGGGGAGTAATAGAACTGGCGAAATTACATAAGGAAATGAACGGTCACGTATCGAAGTTGATCTTGCTTGATCCTCCTCGTACTTCATCCTCACCAAGATTTTGTTGA 1629 0.3984 MPKPCDLQINIDGQQIFLLKEKVISKYCGGLKKILNHRKRRGHVKQELGIRINDFPGGPEGFELVSMFCYNNGKIQITEANVCLLHCCAVYLGMTEEVLSNNLLQQTETFLQGIFNWKWSDTLMILKSCERFHAYADGYGLLEKIISVLAKFVQNSDSNLLMSSPSASASSSSSSPETNSAKRFSFSSKKTTPEKIKSTLSRKAWWFDDLATLPPNIIEKLVQATGAYKADNKDLVLTRFLLHYLKLATQTRVVNCSNNSEYAALAETATYGVISVGKKTFSCRGLFWVLRIVSKFGLGRDVRTELEKLIGGVIEQATLDDLLVSGHDMGVYYDINLVIRLVRVFVDMNGSDEGMCLQKLKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYLQSHPIITFEERSRLCRCLNYTKLTFEASKDLAKNPRIPPRVAMQALISQQSKVPTIDYVTESPRVKPSQLVLYNGKTRNSFTKEKKEMELNIDKMQWGVIELAKLHKEMNGHVSKLILLDPPRTSSSPRFC* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0318 542 Pfam NPH3 family 205 439 IPR027356 -
Vra2g0318 542 MobiDBLite consensus disorder prediction 167 186 - -
Vra2g0318 542 ProSiteProfiles NPH3 domain profile. 204 463 IPR027356 -
Vra2g0318 542 SUPERFAMILY POZ domain 3 96 IPR011333 -
Vra2g0318 542 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 520 - -
Vra2g0318 542 PANTHER OS12G0117600 PROTEIN 2 520 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0318 Vra-Chr2 2425538 2428708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0318 6 466 EF-hand Containing Proteins AT3G44820 27.668 7.45e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0318 - - gmx:100808259 870.152