Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0314 ATGGCAACCCATCCTGGAAAACAAGCTCTTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTACGGGACTGACGAAAATATGTTGGCTGAATATTTTGGCACCATTGGACTAGTGAAGAAAGATAAACGTACCGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTGACGTATGAAGATCCACATGCTGCTATAGCGGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATATAATTGGCGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAACTTATAATTCAGCAGGAGTAGAACCAGTAGTTGCTGGTACTGTTGTTGGATTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGACAAAATGATCCTTCAGGCAAAGCATGGCAACAAGATGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCAATGTGAACTTTGCTTTCCGTGGTGCCTGTAACCGCTGTGGAACTGCCCGTCCTGCTGGTGCTGCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAAGGACGTGCTGCTGGACAAGAACCAGGAGGTGTTGGCCGGCCAGTTGGTGGAGGACTATTTGGTCCCAATGATTGGCCCTGTCCAATGTGTGGCAATATCAACTGGGCGAAGCGGACTAAATGTAATATTTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAAGAAATAGAAGAAACCAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCGCGTGGGCTTCCTGGTTCAGGACGTGCTGGTTGGGAGGTTGAAGAACTAGGGATAGACAAGGATGGTAGAGAAAGTAGAGACAGAGGAAGAGAACGTAATGATGGGGAGAGCAGGAGCAGAGAGCGAAGTGACAAAGAGAGGCAAAGCAGTTGGAATAGGGACAGAGACAGGGACAGGGGAAGAGATCGAGACCGAGACTGGGACTATGTTGACCGAGACAGAGATTATGGACGAGATCGGGACCGTAGTAGACACAGATATTAA 1173 0.4646 MATHPGKQALSNGSVYVCNLPYGTDENMLAEYFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAIAAVEWFNNKDFHGNIIGVFIAESKNKDDQTYNSAGVEPVVAGTVVGLEETTKDVNGGSGRGRGQNDPSGKAWQQDGDWLCPNTSCSNVNFAFRGACNRCGTARPAGAAGISGAGGRGKGRAAGQEPGGVGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGIDKDGRESRDRGRERNDGESRSRERSDKERQSSWNRDRDRDRGRDRDRDWDYVDRDRDYGRDRDRSRHRY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0314 390 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 390 - -
Vra2g0314 390 ProSiteProfiles Zinc finger RanBP2 type profile. 150 181 IPR001876 -
Vra2g0314 390 MobiDBLite consensus disorder prediction 256 279 - -
Vra2g0314 390 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Vra2g0314 390 Pfam Zn-finger in Ran binding protein and others 151 180 IPR001876 -
Vra2g0314 390 MobiDBLite consensus disorder prediction 124 150 - -
Vra2g0314 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Vra2g0314 390 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 390 - -
Vra2g0314 390 SUPERFAMILY Ran binding protein zinc finger-like 211 245 IPR036443 -
Vra2g0314 390 MobiDBLite consensus disorder prediction 316 390 - -
Vra2g0314 390 Gene3D - 12 95 IPR012677 -
Vra2g0314 390 SUPERFAMILY Ran binding protein zinc finger-like 144 182 IPR036443 -
Vra2g0314 390 MobiDBLite consensus disorder prediction 185 207 - -
Vra2g0314 390 MobiDBLite consensus disorder prediction 245 279 - -
Vra2g0314 390 Gene3D - 147 183 - -
Vra2g0314 390 Gene3D - 214 245 - -
Vra2g0314 390 MobiDBLite consensus disorder prediction 294 390 - -
Vra2g0314 390 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Vra2g0314 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Vra2g0314 390 CDD RRM_SARFH 15 97 - -
Vra2g0314 390 SUPERFAMILY RNA-binding domain, RBD 12 102 IPR035979 GO:0003676
Vra2g0314 390 Coils Coil 259 279 - -
Vra2g0314 390 MobiDBLite consensus disorder prediction 133 150 - -
Vra2g0314 390 ProSitePatterns Zinc finger RanBP2-type signature. 154 175 IPR001876 -
Vra2g0314 390 SMART zf_4 217 241 IPR001876 -
Vra2g0314 390 SMART zf_4 152 178 IPR001876 -
Vra2g0314 390 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
Vra2g0314 390 SMART rrm1_1 14 95 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0314 - - gmx:100780819 569.311