Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0309 ATGATTCTACAACACGCTTCTTCCATTTCACACTTCTCTTCACTCTCTCCTTCTCTCTGTCCTTGTAACGCAGCATTTCCGTTCTCCAGAAGAACCAGAAAGCGGTTATTCGGAAATTTCGGTTCCCGCAAATTCCGCAGAAAACGCACCGTTCGCCTCTGCGCCCTTCCTTCCGACGCTTCCAACCCGAACTGGAATTCAGAATTCGCAAGTTCCGCGCGGAGAACCGCCGCAACGTTCGTTCTCAAACGAATTTCCAGTGAACTCGACGAAGACAACAACATCAGCAACGATGTTGATGAAACCGAGCTGCACGATTTAGCTTCGCCGTCCTCGTCGTCGCCGTCGGCGGCGGTTCAATTAGGTTCAAACTTCACCGGTTTCCAAGAGGATCCTATTGTGGATAAGCTGAGGACGCAGCTAGGGGTTATTCACCCGATTCCGTCGCCTCCGATTAACCGCAACGTGGTTGGCCTGTTTGTGTTCTTCTTCTTCGTTGGCGTAGTGTTCGATAAACTGTGGACTTCGCGGCGGCGGAGCAAGAGCAGCGGTGAGGATGGGCTGCGCGGCGTGTGGCCGCAGGTGCCGACGAGCTTTTCGCTGTTCCTGGAGAAGGATTTGCAGAGGAAGGAGTCCGTGGAGTGGGTGAACATGGTGCTAGGGAAGCTGTGGAAGGTGTATAGAGGTGGAATCGAGAACTGGATTATAGGGTTGCTTCAGCCTGTGATTGACAACTTGAAGAAGCCTGATTACGTTGAGAGGGTTGAGATTAAGCAGTTCTCGTTAGGAGATGAACCCTTGTCTGTTAGGAATGTTGAGCGCAGGACTTCCCGCAGGGTCAACGACTTGCAGTACCAGATAGGGCTTAGGTACACAGGTGGTGCTCGCATGCTGTTGATGCTTTCTCTGAAATTTGGCATCATTCCAATTGTCGTACCTGTTGGTGTTCGAGATTTTGACATCGATGGCGAACTTTGGGTAAAATTAAGACTAATACCAACGGAACCATGGGTGGGAGCTGTTTCATGGGCTTTCGTTTCACTTCCCAAGATCAAGTTTGAACTATCTCCATTCCGTCTGTTCAATTTAATGGCAATTCCAGTTCTCTCGATGTTTTTGACTAAACTTCTCACTGAAGATTTACCCAAACTATTTGTACGTCCAAAGAAAATAGTTTTAGATTTCCAAAAAGGAAAAGCTGTGGGTCCAGTTGCCGCTGATGTTAAATCTGGAGAAATGCAAGGAAATAAAGATTCTGTGGGTGAACTATCTGTTACTCTGGTGGATGCTCGAAAACTTTCTTATATTTTCTATGGCAAGACAGATCCTTATGTTGTTCTTAGCCTTGGTGATCAAGTTATACGGAGCAAAAAGAATAGTCAAACTACCGTAATTGGACCCCCAGGAATGCCAATTTGGAATCAGGATTTTCATATGCTCGTTTCCAACCCTAGAAAACAGAAGTTATTCATTCAAGTAAAGGACGCTCTAGGGTTTGCAGATTTGACTATTGGTACAGGAGAGGTTGATTTGGGGTCTCTTAAAGACACTGTACCAACAGACAAAATTGTGGTTTTACAAGGAGGTTGGGGATTTTTAGGAAAGCGCTCTTGTGGCGAGATATTACTTCGGCTAACATATAAAGCATATGTGGAGGATGAGGAAGATGATAAAACTGAGATGAGCTCCATTTATACTGATGTTTCTGATGACGAGTTGTCTGATTCGGAAGCAAATGTCACTGACGAGAGGGAGGAAAGAAATTCTTTGTACGAAACAGATAAAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTGAGCGAAGAATTTCAGGGGATAGTAGCATCTGAAACAGGGTTTGGCAAAGTTTTGGATAATGGCTCAAATGCTGCGTCTAAAGTGTCAAAGTCTCCCGTTCCCAATGCTGAACCAACTCCTTCTAGTTCTGATAATTCTGAAGGCTCTGGAGGGTCAGCCTTACTTTGGCTTGCTGTGATTACTAGCGTATCACTACTAATTTCTCTCAATGTTGGGGGATCCAATCTCTTCAATCCTTAA 2061 0.4551 MILQHASSISHFSSLSPSLCPCNAAFPFSRRTRKRLFGNFGSRKFRRKRTVRLCALPSDASNPNWNSEFASSARRTAATFVLKRISSELDEDNNISNDVDETELHDLASPSSSSPSAAVQLGSNFTGFQEDPIVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTSRRRSKSSGEDGLRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDNLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTEDLPKLFVRPKKIVLDFQKGKAVGPVAADVKSGEMQGNKDSVGELSVTLVDARKLSYIFYGKTDPYVVLSLGDQVIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPRKQKLFIQVKDALGFADLTIGTGEVDLGSLKDTVPTDKIVVLQGGWGFLGKRSCGEILLRLTYKAYVEDEEDDKTEMSSIYTDVSDDELSDSEANVTDEREERNSLYETDKESFMDVLAALIVSEEFQGIVASETGFGKVLDNGSNAASKVSKSPVPNAEPTPSSSDNSEGSGGSALLWLAVITSVSLLISLNVGGSNLFNP* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0309 686 Gene3D C2 domain 402 550 IPR035892 -
Vra2g0309 686 ProSiteProfiles C2 domain profile. 409 524 IPR000008 -
Vra2g0309 686 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 209 396 IPR031468 GO:0008289
Vra2g0309 686 MobiDBLite consensus disorder prediction 632 655 - -
Vra2g0309 686 SMART C2_3c 422 523 IPR000008 -
Vra2g0309 686 CDD C2 423 517 - -
Vra2g0309 686 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 28 686 - -
Vra2g0309 686 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 421 550 IPR035892 -
Vra2g0309 686 Pfam C2 domain 421 519 IPR000008 -
Vra2g0309 686 MobiDBLite consensus disorder prediction 558 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0309 Vra-Chr2 2363600 2370142 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0309 - - gmx:100817508 1107.43