Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra2g0307 | ATGGCTTCGCCGGCGTGGTTGCCGCAGGAGGCGAAGCCACCTGTGTCCGGAGAAACCTCTCTTCCTATGGCTTCTCCCGCTCCTAGTTCCGCTCATGCAACTCCTTCTACTGCTCCGGCACCGGCAACTCCATTTCCTCACGGGGTTCTTCAGAATGCCAATGTTTCGGGAAGCCCTCAGCAATCATCGACACATAATGTGATAAAATCCAATTCAACGGTAAACCCTGTAGTTTTTCAACCTCCAGTTCCCGGTGTCTCGTCGCATGCTGCTCTTTCATTTTCATATAATGTTCCCCAGAGTGGTGGTGCTTTTTCTAGCAGCCAGCAGCATACTCAATCCAGTGGTAAAATCTCCGAATCTGTTGCACAAGATGTTACTAAATTGTCATCTGCAGCAAGTACCCCACATTCCGTTCCTGCTCATACTTCTACAATGATAATGCCTCCCTCTGATCCTAATTATCGTCCAACTACTTCGTGGATGCCCACTGCCATGTCTTTTCCTTTGCATCCTGTAATGCCTACTCCAGGAAATCCTGGCCCTCCTGGATTAACATCATCTTCTATAATATCCATCAATACTGCTGTTCCATCTACAGGAACAGATTCTTCCTCAGCTGCTTTACCGAGACCAAACATGCCAATTTCAGCTATTGCATCGGATCCTACTGCCCCTCTGAAAGGTTTACCCTATCCATCCATGCCTTCAATGGCTGCTCCCCCTCAGGGACTTTGGTTACAGGCCCCACAGATGAGTGGTGTCTTTAGACCCCCATATTTACAATACCCTGCTCCTTTTCCTGGCCCCTTTCCATTTCCAGCACGTGGTGTTACTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGAGTGGTGGCAGTGGCACTTCTACTCTTGCTTCCAGCAATCAGCCAAGGGGAACAACTGCTTTGCAAACAGAAGCTATTTCAGGGCCAGCTGACGATAAGAAGAAATTAAATGCTGTTGTCACCCAGAATGAGGGTGCTGCTAATAATGATCAATTAGAGGCCTGGACTGCCCACAAGACTGAAGCAGGAATTATATACTACTATAATGCCTTGACTGGAGAATCAACATATGATAAACCTGCTGGATTTATAGGGGAGCCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGATGGATTTGCCTGGTACTGATTGGTTGTCGGTCTCTACTAGTGATGGAAAAAAATATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATTCCAAATGAGGTGTCTGAATTGAAAAAGAAACAAGATGGTGATGTTGCAAAAGATCAGTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAATCTACAGAGCCCATCATCGGCTTTGGATTTGATCAAGAAGAAATTGCAGGATTCAGGAACACCTGTTACTTCCTCTTCTATTCCTGTGCCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAGCAATTGAATCTACCTCTAAGGGCATGCAAGCAGATAATAGCAAAGATAAGCAAAAAGATACTAATGGTGCTACTAATGTTTCTGATACATCTTCAGATTCTGAAGATGAAGACAGTGGGCCTTCAAAGGAGGAGTGCATCATTCAATTCAAGGAGATGCTCAAGGAACGCGGAGTGGCACCATTCTCAAAATGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCAAGTTATTCTGCTAGAAGATCCTTGTTTGAGCATTATGTTAAAACCCGTGCTGAAGAAGAACGCAAAGAAAAGCGTGCTGCACAGAAGGCTGCAATTGAAGGATATAAGCAATTACTGGATGAAGCCTCAGAGGATATTAACTACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAGCAAGAGCACTTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGACTCAAGCAATGCGTGCAGCTGCTGCAGCCAGTTTTAAGTCAATGCTTAAAGAGCGAGGAGATATATCTTTCAACTCACGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGGTTTGTTCAATGAGTATTTATCTGAACTGAAAGCTGCTGAATATGCGACAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGAGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAGAGAGTGCGACTAAAAATTAGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTCGTGGAGACAATCAAAGATCCTCTGGCATCATGGACGGAATCGAAACCTAAATTAGAAAAGGATCCTCAAGGACGCGCAACTAATCCTGAACTTGATTCTTCTGATACGGAAAAGTTGTTTCGGGAACACGTGAAGATGCTTCAGGAGCGATGTGCTCACGAATTTAGAGTTCTCTTGGCTGAAGTATTGACCACTGATGCTGCATCTCATGAAAATGACGATGGAAAAACAGTGCTCAATTCTTGGTCTACAGCTAAGCGAGTTCTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGCAGGTATGCAGAGGATATGCTGCGGCGTCAAAAGGCATCTCATTCACATGATTCCAGGGAAGATAAACATACTGATGCTAAAGGTAGAAGTTCTCTAGAATCTTCCAAACATCAATTGGAATCTGGGAGATCGCATGACCGAAGATAA | 2928 | 0.4402 | MASPAWLPQEAKPPVSGETSLPMASPAPSSAHATPSTAPAPATPFPHGVLQNANVSGSPQQSSTHNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQSGGAFSSSQQHTQSSGKISESVAQDVTKLSSAASTPHSVPAHTSTMIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPGNPGPPGLTSSSIISINTAVPSTGTDSSSAALPRPNMPISAIASDPTAPLKGLPYPSMPSMAAPPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGVTLPAVPIPDSQPPGVTPVSGGSGTSTLASSNQPRGTTALQTEAISGPADDKKKLNAVVTQNEGAANNDQLEAWTAHKTEAGIIYYYNALTGESTYDKPAGFIGEPHQVSAQPTPVSMMDLPGTDWLSVSTSDGKKYYYNNRTKTSCWQIPNEVSELKKKQDGDVAKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPVPSVQTGSESNGSKAIESTSKGMQADNSKDKQKDTNGATNVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGYKQLLDEASEDINYNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKTQAMRAAAAASFKSMLKERGDISFNSRWSRVKESLRDDPRYKSVRHEDREGLFNEYLSELKAAEYATERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTTDAASHENDDGKTVLNSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHSHDSREDKHTDAKGRSSLESSKHQLESGRSHDRR* | 976 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra2g0307 | 975 | Coils | Coil | 771 | 812 | - | - | |
| Vra2g0307 | 975 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 116 | 974 | IPR045148 | GO:0003712|GO:0070063 | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
| Vra2g0307 | 975 | ProSiteProfiles | FF domain profile. | 637 | 692 | IPR002713 | - | |
| Vra2g0307 | 975 | SUPERFAMILY | FF domain | 629 | 698 | IPR036517 | - | |
| Vra2g0307 | 975 | SMART | ww_5 | 346 | 378 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | SMART | ww_5 | 398 | 430 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | ProSiteProfiles | FF domain profile. | 705 | 759 | IPR002713 | - | |
| Vra2g0307 | 975 | Gene3D | FF domain | 555 | 627 | IPR036517 | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 101 | 150 | - | - | |
| Vra2g0307 | 975 | CDD | WW | 401 | 430 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 403 | 430 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 116 | 974 | - | - | |
| Vra2g0307 | 975 | SUPERFAMILY | WW domain | 350 | 380 | IPR036020 | GO:0005515 | |
| Vra2g0307 | 975 | SMART | FF_2 | 570 | 624 | IPR002713 | - | |
| Vra2g0307 | 975 | SMART | FF_2 | 637 | 692 | IPR002713 | - | |
| Vra2g0307 | 975 | SMART | FF_2 | 808 | 865 | IPR002713 | - | |
| Vra2g0307 | 975 | SMART | FF_2 | 705 | 759 | IPR002713 | - | |
| Vra2g0307 | 975 | Coils | Coil | 634 | 654 | - | - | |
| Vra2g0307 | 975 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 351 | 378 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | SUPERFAMILY | FF domain | 565 | 630 | IPR036517 | - | |
| Vra2g0307 | 975 | SUPERFAMILY | FF domain | 699 | 763 | IPR036517 | - | |
| Vra2g0307 | 975 | Gene3D | FF domain | 697 | 771 | IPR036517 | - | |
| Vra2g0307 | 975 | ProSiteProfiles | FF domain profile. | 570 | 624 | IPR002713 | - | |
| Vra2g0307 | 975 | ProSitePatterns | WW/rsp5/WWP domain signature. | 351 | 376 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | Pfam | FF domain | 811 | 862 | IPR002713 | - | |
| Vra2g0307 | 975 | Pfam | FF domain | 640 | 687 | IPR002713 | - | |
| Vra2g0307 | 975 | Pfam | FF domain | 708 | 756 | IPR002713 | - | |
| Vra2g0307 | 975 | Pfam | FF domain | 576 | 621 | IPR002713 | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 22 | 37 | - | - | |
| Vra2g0307 | 975 | Gene3D | - | 330 | 387 | - | - | |
| Vra2g0307 | 975 | Gene3D | - | 388 | 446 | - | - | |
| Vra2g0307 | 975 | ProSiteProfiles | FF domain profile. | 808 | 865 | IPR002713 | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 934 | 975 | - | - | |
| Vra2g0307 | 975 | Gene3D | FF domain | 628 | 696 | IPR036517 | - | |
| Vra2g0307 | 975 | SUPERFAMILY | WW domain | 402 | 433 | IPR036020 | GO:0005515 | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 293 | 313 | - | - | |
| Vra2g0307 | 975 | Gene3D | FF domain | 866 | 932 | IPR036517 | - | |
| Vra2g0307 | 975 | Gene3D | FF domain | 805 | 865 | IPR036517 | - | |
| Vra2g0307 | 975 | CDD | WW | 351 | 376 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 503 | 570 | - | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 767 | 796 | - | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 49 | 67 | - | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 284 | 313 | - | - | |
| Vra2g0307 | 975 | SUPERFAMILY | FF domain | 801 | 870 | IPR036517 | - | |
| Vra2g0307 | 975 | ProSitePatterns | WW/rsp5/WWP domain signature. | 403 | 428 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 503 | 536 | - | - | |
| Vra2g0307 | 975 | Pfam | WW domain | 349 | 376 | IPR001202 | GO:0005515 | |
| Vra2g0307 | 975 | SUPERFAMILY | FF domain | 867 | 938 | IPR036517 | - | |
| Vra2g0307 | 975 | MobiDBLite | consensus disorder prediction | 832 | 855 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra2g0307 | K12824 | - | gmx:100815386 | 1504.58 |