LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0302	ATGAACTTTTTTGTGCTTCAGGTTTACAAGTTACCTTCAGATCGCTTGTATGCCACATATTTTGGTGATGATGACAAGGCTGGTCTTGCCCCTGATTTTGAGGCTAGAGATATATGGTTGAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGATGTAAAGACAATTTCTGGGAAATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTAAATAACGATGATCCTACTTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCGCTTCCAGCAAAGCATGTTGATACGGGCATGGGTTTTGAACGACTGACCTCTATACTACAAAATAAAATGAGCAATTATGACACTGACGTCTTCATGCCAATCTTTGATGTTATTCAGAAGGCGACTGGTGCCAGACCATATTCTGGTAAAGTTGGAGCAGATGATGTAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCATATCAGAACTCTTTCATTTGCCATTGCTGACGGGTCTCGTCCTGGTAATGATGGCCGTGAGTATGTTCTAAGACGAATACTTCGTCGAGCTGTGCGGTATGGACGAGAAGTGCTAAAAGCTAAAGAGGGATTTTTCAGTGGGCTTGTAAGTGTGGTGGTGAATTTGATGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAAGTCACATTCGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGTATCGAGAAATTTGAGACAGCTGTTCAACATGTTCAGGGAAAGACACTGAGTGGGGAGGAAGCATTTGTCTTGTGGGATACATATGGATTCCCATTAGATCTCACTCAGCTGATGGCTGAAGAAAAGGGATTAGTTGTTGATGTTAAAGGTTTTGATAGGGCAATGGAGGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGGGCCATTGTCATGGATGCTGATGCTACCTCTGCATTGCACAAAAGGGGCATAGCCCCAACAGATGATAGCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTGGTACAAGCAATATATACTGGTTCTGAGTTTGTTGATACCGTTAATACTGGTGAGGATGTTGGTTTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGTACAATTGGTTCATTTCAAGTGCATAATACTCAAGTTTACGGAGGTTTTATTCTTCACATTGGTAATGGAACTGGTGTCTCTGTTGGTGACAGAGTAGTATGCAAGGTTGACTATGGAAGACGTGCCCTCATAGCCCCTAACCATACCTGCACGCACATGTTAAACTTTGCTCTTAGGGAAGTACTTGGCAATCATGTTGACCAGAAAGGATCCATTGTTCTACCTGAAAAATTGAGATTCGACTTTTCTCATGGCAAGCCTGTTGACACCGACAATTTAAGGAGAATTGAGGCAATTGTTAATGAACAAATTAAAGCTGAATTGGATGTAAGTGCAAAGGAAGCAACTCTTGCCGAAGCCAAGCGTATCAATGGTTTACGAGCTGTTTTTGGTGAAGTCTATCCCGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTTCTTGCTGACCCTGACAATGAAAAATGGTTATCTATTTCAGCAGAATTATGTGGAGGCACCCATATTTCAAATACACGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGCATTGCAAAAGGCATACGCAGAATAACAGCTGTCACAACTGATCNTGCTTATGATGCAATGAAAGTGGCNGATGAATTGGAGCAGCAAGTAGATGAAGCAGCTAAGTTAGATGGAAGTTTGTTGGAAGAGAAAGTTTCATCTTTGAAAAACAATGTTGAAACGATATCAATTCCTGCTGCCAAGAAAGCTGACATCAAATCAAAGATAGCCCGACTTCAGGACCAAGTGAGAAAAGCACAAAAGCAGATTGCTGAGGAAAACAAGCGTAAAGCTGTGAATATTACAGCTGAGAAAGCTGAGCTTGCTGCTTCTAACGGGAAAACCTTTTGCATATCTCGTGTTGATGTTGGTCTGGATGTGGCTGCAGTTCGTGAGGCTGTTACAAAAGTTATGGACCAAAAGGGTTTATCTGTGATGGTTTTTAGCACGGATGAATCTACAAACAAGGCTGTAATTTGTGCTGGGGTGCCAGAGAAAGGAGATAAAGGTAAGCTGGATGTGGCAGAGTGGCTGAGTAATGCGTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCAACGGGTCAGGGTACAGATGCAGCACACGTTAACGAGGCTATGGATCTTGCAGAAAAATTTGCATCAATGAAGTTGAGTTAA	2484	0.4239	MNFFVLQVYKLPSDRLYATYFGDDDKAGLAPDFEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDVIQKATGARPYSGKVGADDVDKVDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFSGLVSVVVNLMGDVFPELKQQESHIRNVIEEEEESFGRTLIKGIEKFETAVQHVQGKTLSGEEAFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDRAMEAARERSRSAQTKQAGGAIVMDADATSALHKRGIAPTDDSFKYAWFKDHESVVQAIYTGSEFVDTVNTGEDVGLVLESTSFYAEQGGQIFDTGSLEGTIGSFQVHNTQVYGGFILHIGNGTGVSVGDRVVCKVDYGRRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDTDNLRRIEAIVNEQIKAELDVSAKEATLAEAKRINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPDNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDXAYDAMKVADELEQQVDEAAKLDGSLLEEKVSSLKNNVETISIPAAKKADIKSKIARLQDQVRKAQKQIAEENKRKAVNITAEKAELAASNGKTFCISRVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVICAGVPEKGDKGKLDVAEWLSNALGPLKGRCGKGKGGLATGQGTDAAHVNEAMDLAEKFASMKLS*	828

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra2g0302	827	SMART	tRNA_SAD_4	561	620	IPR012947	GO:0004812\|GO:0005524\|GO:0043039
Vra2g0302	827	Gene3D	-	370	459	-	-
Vra2g0302	827	TIGRFAM	alaS: alanine--tRNA ligase	4	804	IPR002318	GO:0000166\|GO:0005737
Vra2g0302	827	SUPERFAMILY	Translation proteins	386	459	IPR009000	-
Vra2g0302	827	SUPERFAMILY	Class II aaRS and biotin synthetases	4	140	IPR045864	-
Vra2g0302	827	PANTHER	BNACNNG61840D PROTEIN	6	826	-	-
Vra2g0302	827	Gene3D	-	712	822	-	-
Vra2g0302	827	Gene3D	Bira Bifunctional Protein; Domain 2	1	137	IPR045864	-
Vra2g0302	827	Pfam	DHHA1 domain	682	821	IPR003156	GO:0003676
Vra2g0302	827	SUPERFAMILY	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	141	341	IPR018162	GO:0000166\|GO:0004813\|GO:0005524\|GO:0005737\|GO:0006419
Vra2g0302	827	Pfam	tRNA synthetases class II (A)	4	461	IPR018164	GO:0000166\|GO:0004813\|GO:0005524\|GO:0006419
Vra2g0302	827	PRINTS	Alanyl-tRNA synthetase signature	94	105	IPR002318	GO:0000166\|GO:0005737
Vra2g0302	827	PRINTS	Alanyl-tRNA synthetase signature	121	134	IPR002318	GO:0000166\|GO:0005737
Vra2g0302	827	PRINTS	Alanyl-tRNA synthetase signature	178	194	IPR002318	GO:0000166\|GO:0005737
Vra2g0302	827	PRINTS	Alanyl-tRNA synthetase signature	202	215	IPR002318	GO:0000166\|GO:0005737
Vra2g0302	827	Hamap	Alanine--tRNA ligase [alaS].	1	826	IPR023033	GO:0004813
Vra2g0302	827	SUPERFAMILY	ThrRS/AlaRS common domain	459	644	IPR018163	GO:0000166
Vra2g0302	827	Coils	Coil	673	700	-	-
Vra2g0302	827	PANTHER	ALANYL-TRNA SYNTHETASE	6	826	-	-
Vra2g0302	827	Gene3D	-	460	636	-	-
Vra2g0302	827	Pfam	Threonyl and Alanyl tRNA synthetase second additional domain	561	619	IPR012947	GO:0004812\|GO:0005524\|GO:0043039
Vra2g0302	827	ProSiteProfiles	Alanyl-transfer RNA synthetases family profile.	1	633	IPR018165	GO:0003676\|GO:0004813\|GO:0005524\|GO:0006419

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0302	Vra-Chr2	2291956	2316595	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0302	K01872		-	gmx:100788271	1466.83