Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0301 ATGGAAGCAATAGATTATCATGGTGTGCGCAAGAGATCAAGAAAGCCTAAAAAGAGAGGCAGGCGAAAAGGATCGAAGAATAAAACGGACCCTAAGCTAACATGGATGCTGGGTGAGGCCGCATGTCACTATTCAAATGACCGTTATGACGAGGCTAAAGCTATGCTGCTTGAAGTTATTAAGTTGGCACCGAATGTGGCTGAATCTTATCACACCCTTGCACTTGTCTTTGATTCACTCCAGGATAAGAAAACTGCAATGAGTTTTTTCCTAATTGCTGCTCATTTGGATTCTAAATATTCATCTTATTGGGAAATCATTTATGACTGGTCCATAAAACAAGATGATTATGGTCAAGCACGATATTGTCTTTTAAAAGCAATAAGAGCATATCCCAAAAATATTACTCTTAGATGTCATCTTGCAGAGCTTTATGTTAAACTTGGAGACTATCAAAAAGCTGCTGTTACATATGAGCAAGTACATCAACTCTGTTATGAGAATGTTGATGCACTGAAAATGGCAGTTAAGTCGTACAAAAAATGTGGTCAAGTTGAGCGTGGTGTTTGTATTCTTGAAGACTACCTTAAGAGTCAACCGGGCGGAGCAAATGTGAGTGTAGTTGATCTGCTGTGTACCATATTGATGGAAACTAAGGCACATGACAGAGCTTTGCAGTATATTAAACATGCCCAAGCTGCAAATGCATGGGAAGAATTACCGTTGAATTTGAAAATTAAGGCCGGAATTTGCCATGCTCATCTTGGAAAAATGGATATGGCTCAGGTTCTCTTCAATGATTTGAAACCAAAGAATGCAAGCAAGCATGCTAAATTGGTTATTGAGGTTGCTGATTCATTAATGGGTCTTGAACATTATAACCCTGCATTGAATTACTATTTGATGTTGGAAGGAAATATTGGAAACGAAAATGGTCCTTTATATCTGAAACTTGCTAAATGTTACAGGTCCTTGAAAAAAAGTTCACAAGCAATTACTTTTTTTTACAAAGCCCTTGAAATACTACAAGATGACGTTGATGCACGGATAACTCTAGCTTCCCTTCTGCTTGAAGACGGAAAAGAAGATGAAGCAATTTCCTTGTTGTCTCCTCCAAATGATGCTGACTCTGGTGATGCAAATCCTGAAAAGTCAAAGAGATGGTGGGTTGATAAAAGAATAAAACAGAAGCTCTGCAACATTTATAGGAATAGAGGGACACGTGATTTTGTGGATAAAGTTTTCCCTTTGGTTCGTGAATCATTAGATGTTGCAACTCTTCGACAAAAGGGTAAATCAAAAAGGCGACTCACCAAAAGAGATCTGGTCGAGAGGGTTAGGATGGTAGATGGTCCAGAAAATGATAATGTATTTTCAGGATTCAAGCCCATAGCTGCACCATCTGACCGGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTGCAGAAGATGGCAATTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCCGGAATTGATTGGCTAAGTGATGATTCAGACGATGATCCTCAGATAGAAAACAGAGAACTTCCCTTGTGCAATCTTCTGAAATATGAAGAACATCATCAGCTAATAATCGATTTGTGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTCTCTAAGATTGGCTAGTACATCTCTGTCTACTGACAAGAAAGAGGAACTTCGATCCCTTGGAGCTCAAATGGCATACAGCACCACAGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTATAAATTTGTACGTGTTATGCAAGGAAAGTTTGTGGACTGTGTGCCTCCTATTCTAATTTCTGGTCATCAGTTTACCATATTTAGCCATCATCAAGATGCAGCAAGGAAATACCTTGAAGCTTACAAACTATTACCAGAGAATCCCTTGGTTAATCTCTGCGTTGGAACAGCCTTGATCAACTTAGCATTGGGTTTTAGACTTCAGAACAAGCATCAATGTCTTGTACAAGGTTTAGCATTCCTCTACAACAACTTGAGAATCTGCGAGAACAGTCAGGAATCCTTGTACAACATAGCTCGGGCCTATCATCATGTTGGCCTTGTAACTCTGGCGGCTGTTTATTATGAGAAGGTGATTGCTATTCGCGAGAAAGACTGTCCAATTCCAAAACTTCCCAATGAAAATCCAGATGTCATCGAAAATCATAAACCTGGTTACTGCGACCTTCGCAGAGAAGCAGCTTACAATTTGCATTTAATCTACAAAAAAAGTGGCGCTCTTGACCTTGCTAGGCAAGTTCTCAAAGATCACTGTACCTTGTGA 2415 0.3963 MEAIDYHGVRKRSRKPKKRGRRKGSKNKTDPKLTWMLGEAACHYSNDRYDEAKAMLLEVIKLAPNVAESYHTLALVFDSLQDKKTAMSFFLIAAHLDSKYSSYWEIIYDWSIKQDDYGQARYCLLKAIRAYPKNITLRCHLAELYVKLGDYQKAAVTYEQVHQLCYENVDALKMAVKSYKKCGQVERGVCILEDYLKSQPGGANVSVVDLLCTILMETKAHDRALQYIKHAQAANAWEELPLNLKIKAGICHAHLGKMDMAQVLFNDLKPKNASKHAKLVIEVADSLMGLEHYNPALNYYLMLEGNIGNENGPLYLKLAKCYRSLKKSSQAITFFYKALEILQDDVDARITLASLLLEDGKEDEAISLLSPPNDADSGDANPEKSKRWWVDKRIKQKLCNIYRNRGTRDFVDKVFPLVRESLDVATLRQKGKSKRRLTKRDLVERVRMVDGPENDNVFSGFKPIAAPSDRLKASRAKKLLQKMAIEKEKRKAEALASGIDWLSDDSDDDPQIENRELPLCNLLKYEEHHQLIIDLCKALASLQRYWEALEIINLSLRLASTSLSTDKKEELRSLGAQMAYSTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVMQGKFVDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLAFLYNNLRICENSQESLYNIARAYHHVGLVTLAAVYYEKVIAIREKDCPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0301 804 Pfam Tetratricopeptide repeat 313 341 IPR019734 GO:0005515
Vra2g0301 804 Pfam Tetratricopeptide repeat 717 749 IPR019734 GO:0005515
Vra2g0301 804 Gene3D Tetratricopeptide repeat domain 466 803 IPR011990 GO:0005515
Vra2g0301 804 SUPERFAMILY TPR-like 248 366 IPR011990 GO:0005515
Vra2g0301 804 Gene3D Tetratricopeptide repeat domain 246 409 IPR011990 GO:0005515
Vra2g0301 804 SUPERFAMILY TPR-like 37 234 IPR011990 GO:0005515
Vra2g0301 804 MobiDBLite consensus disorder prediction 10 26 - -
Vra2g0301 804 SMART tpr_5 716 749 IPR019734 GO:0005515
Vra2g0301 804 SMART tpr_5 33 66 IPR019734 GO:0005515
Vra2g0301 804 SMART tpr_5 312 345 IPR019734 GO:0005515
Vra2g0301 804 SMART tpr_5 529 562 IPR019734 GO:0005515
Vra2g0301 804 SMART tpr_5 135 168 IPR019734 GO:0005515
Vra2g0301 804 SMART tpr_5 67 100 IPR019734 GO:0005515
Vra2g0301 804 MobiDBLite consensus disorder prediction 1 31 - -
Vra2g0301 804 ProSiteProfiles TPR repeat profile. 312 345 IPR019734 GO:0005515
Vra2g0301 804 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 10 803 IPR039340 GO:0006383
Vra2g0301 804 Gene3D Tetratricopeptide repeat domain 23 240 IPR011990 GO:0005515
Vra2g0301 804 SUPERFAMILY TPR-like 645 799 IPR011990 GO:0005515
Vra2g0301 804 Pfam Tetratricopeptide repeat 139 160 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0301 K15201 - gmx:100804533 1288.09