Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0296 ATGAACATGAAGAACCTGAACATCTCTTTGTGCGTGCTTCTCATAGCTCTTGTGCGCTTAGGAGGAAGTGCACCATCAAGCTTCAACTATGGTGATGCCCTTGACAAGAGTTTGTTGTTCTTTGAAGCACAAAGATCTGGTAAGCTACCACCGCAGCAGCGACTCAAGTGGCGTGGTGATTCCGGCCTCCAAGATGGTTTTCAGCAAGGAGTGGACCTGGTGGGAGGGTACTATGATGCAGGAGATCATGTGAAGTTTGGGTTGCCAATGGCCTACAGTGTCACAATGCTTGCATGGGGAGCCATCGAATTCAGCAAGGAAATTACGAACTTGAACCAAATGGGACATACATTATGGGCAATTAAATGGGGAACCGATTACTTTGTCAAAGCACACACTCAACCCAATGTTCTTTGGGGACAGGTGGGAGATGGAGTTTCTGATCATTACTGCTGGGAGCGTGCTGAAGACATGACTACATCAAGAGGTGCCTACAAAATTGATGAACAACACCCTGGCTCTGATCTGGCAGGTGAAACTGCAGCTGCATTGGCTGCTGCAGCTTTGGCTTTCAGGCCCTACAATTCTTCTTACTCTGGTCTTCTGCTAGTTCATGCAAAACAGCTCTTCACATTCGCAGATAGGTTCAGAGGTCTCTATGATGACTCTATTTCAAGTGCTCAGCAATTTTATGATTCTTCCGGTTACTCAGATGAATTATTATGGGCTGCCACGTGGCTACACCTGGCAACTGGAGATGAATACTACCTAAAGTATGTGGTGGACAATGCTGTGTACATGGGTGGAACTGGCTGGGCAATGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTGCAGATCCTCCTAACAAAGATATTACTGGAAGGGAAAGCTGGTCCTTATGCTGATACACTAAAGCAATACCAGGCCAAGGCAGATTATTTTTCGTGTGCCTGCTTGCAAAAGAATGATGGTTACAATGTCCAGAAAACACCAGGTGGCTTACTATATGTACGTGAATGGAACAACATGCAGTATGTTTCTTCTGCTTCATTCCTTTTAGCTGTTTACTCTAATTACCTCTCAGCAACAAAAGCAAATCTCAACTGCCCAGATGGACAAACTCAGCCTCAGGAGCTCCTCAACTTTGTTAAGTCTCAGGCTGATTATATCCTTGGTAATAACCCGGCTGATATGAGCTACTTGGTTGGATATGAAGCAAAATATCCTCTTCATGTTCACCACAGAGGCGCTTCCATTGCTTCAATCTTTTCTCTTCACAGTGAGGTTGGGTGCACCCAAGGATTTGAGCTGTGGTATAACCGTGCTGAGTCAAATCCTAATGTCATCTTTGGTGCCCTCGTGGGTGGTCCAGATAAAAATGATGGCTTCTCTGATGACAGATCCAATTATGAACAAACTGAGCCTACACTTTCAGGTTCTGCTCCTCTTTTGGGCATCTTTGCTAAACTGCAGAGTTTGTATGGTAATATAGGTAAAGGTTACAACCATAATGAATCACCAACGCCCCAACAAAAAACACAAAGTTACAACCAAGATGAATCACAAGCGTCCCAAAAAAAAACACCGAGCACGTATACAGGAAAAAAAACGGCATCTAAAACATCAGAAGGCGCCCCGGTGCAATTTCTTCACTCAATAAGTAGCTCATGGACTGTTGGAGGTGCAACCTACTACCGTCACAGGGTCATAATCAAGAATACTTCTTCAAAGCCAATTTCAGATCTTAAGTTGGTGGTTAAGGACCTCACAGGCTCCTTATGGGGTCTCTCTTCAACAGAAGAAAAGGACACCTATGAACTTCCTCAATGGCAGAAGGTTTTGAATCCTGGCTCTGAGTGTATATTTGTATATGTTCAAGGCGGACCCCAGGCTAAAGTTTCCATTAAAAGCTTCCAATGA 1926 0.4439 MNMKNLNISLCVLLIALVRLGGSAPSSFNYGDALDKSLLFFEAQRSGKLPPQQRLKWRGDSGLQDGFQQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFSKEITNLNQMGHTLWAIKWGTDYFVKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRGAYKIDEQHPGSDLAGETAAALAAAALAFRPYNSSYSGLLLVHAKQLFTFADRFRGLYDDSISSAQQFYDSSGYSDELLWAATWLHLATGDEYYLKYVVDNAVYMGGTGWAMKEFSWDNKYAGVQILLTKILLEGKAGPYADTLKQYQAKADYFSCACLQKNDGYNVQKTPGGLLYVREWNNMQYVSSASFLLAVYSNYLSATKANLNCPDGQTQPQELLNFVKSQADYILGNNPADMSYLVGYEAKYPLHVHHRGASIASIFSLHSEVGCTQGFELWYNRAESNPNVIFGALVGGPDKNDGFSDDRSNYEQTEPTLSGSAPLLGIFAKLQSLYGNIGKGYNHNESPTPQQKTQSYNQDESQASQKKTPSTYTGKKTASKTSEGAPVQFLHSISSSWTVGGATYYRHRVIIKNTSSKPISDLKLVVKDLTGSLWGLSSTEEKDTYELPQWQKVLNPGSECIFVYVQGGPQAKVSIKSFQ* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0296 641 SMART CBM49_2 549 629 IPR019028 GO:0030246
Vra2g0296 641 Pfam Glycosyl hydrolase family 9 30 488 IPR001701 GO:0004553|GO:0005975
Vra2g0296 641 Pfam Carbohydrate binding domain CBM49 550 628 IPR019028 GO:0030246
Vra2g0296 641 PANTHER ENDOGLUCANASE 5 10 596 - -
Vra2g0296 641 PANTHER ENDO-1,4-BETA-GLUCANASE 10 596 - -
Vra2g0296 641 MobiDBLite consensus disorder prediction 500 541 - -
Vra2g0296 641 SUPERFAMILY Six-hairpin glycosidases 27 498 IPR008928 GO:0005975
Vra2g0296 641 Gene3D - 26 496 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0296 Vra-Chr2 2233599 2238206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0296 28 640 Glycoside Hydrolase AT1G48930 67.537 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0296 K01179 - gmx:100802420 1150.19