Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0290 ATGGCCACTCTGCAATTCACCTTCATCGACTCAACCTCCTTGATCAGGCCTTCTTTACATTCCTCGCGAACCTTCCCTCGGAATCGAAGCCTCCTCATCAAAGCCTCTTCTTCTTCTTCTTCTTCCGACGACATTTCCCGGAGCAGGAGACGCTTCCTCGCCGAAACCGCCGCAATATCGCTTTCGCTTCCTCACTTTCCGGCGAGGGCCGAAGACACGCTTTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCTGACGACCCCAACCATGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAGGACGGAGGAAACACTTGGGCTCCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTATCGCTTTAATTCTATCAGTTTCAAGGGGAAGGAAGGCTGGATAGTTGGAAAGCCTGCGATTCTGTTGTACACTGCTAATGCTGGAGAAAGCTGGGAGAGGATACCTCTCAGCGCCGAACTTCCAGGGGATATGGTGTACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTCACTGACGAAGGTGCAATATACGTTACTGCTAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCGTTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATACAGAACATGGGATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGCGGTCTTTATCTCAGCAAGGGAACAGGTTTAACTGAAGAATTTGAGGAGGTTCCAGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTCGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCCAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGACAAGAAGGGATTTGTATTGGGGAATGATGGAGTGTTGCTTCGCTACCTTGGATAG 1188 0.4949 MATLQFTFIDSTSLIRPSLHSSRTFPRNRSLLIKASSSSSSSDDISRSRRRFLAETAAISLSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTANAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGQSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0290 395 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 41 395 - -
Vra2g0290 395 PIRSF Photosystem_II_Ycf48-like 40 395 IPR016705 -
Vra2g0290 395 Pfam Photosynthesis system II assembly factor YCF48 73 393 IPR028203 -
Vra2g0290 395 Gene3D - 132 359 IPR015943 GO:0005515
Vra2g0290 395 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 76 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0290 Vra-Chr2 2196713 2201154 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0290 - - gmx:100810566 740.725