Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0286 ATGAGAGGTTTTGCGAGAAGCTCGAACTCTTTGATGAGGAAGTTGTTCCATGGAAAGAACGTTCAATCCCAATGCAGTAGTCGTTCGTACAGTCTCATCCCAATGGTGATTGAGCACTCTTCCCGAGGGGAGAGGGCTTACGACATCTTCTCGCGCCTCCTCAAGGAGCGCATTATCTGCATCAATGGACCCATCTCCGACGACACTGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACGTCAACTCCCCTGGTGGTGCCGTCACCGCAGGGCTAGCTATCTATGATACGATGCAGTATATTAGGTCTCCGGTCAGTACGGTATGCATGGGCCAAGCTGCATCCATGGGTTCTCTCCTATTGGCTGCGGGTGCCAGGGGGGAGAGGCGGGCTCTTCCAAATGCATCAATCATGATTCACCAACCTTCTGGTGGTTTTAGTGGCCAGGCAAAGAATATTGCGGTTCACGCCAAGCAGATCGTTCGAGTTTGGGATTCTTTGAATGCGTTGTATGCCAAGCACACAGGCAAGTCGGTTGAGGTCATTCAGGCAAATATGGACGCAGATAACTTCATGACTCCTCAAGAGGCCAAAGAGTTTGGGATCATTGACGAGGTCATTGACCAGAGACCTATCACTTTGGTTTCTGATGCTGTTGGTAATGAAGGGAAAGACAAAGGTTCCAATTAG 726 0.5028 MRGFARSSNSLMRKLFHGKNVQSQCSSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYVNSPGGAVTAGLAIYDTMQYIRSPVSTVCMGQAASMGSLLLAAGARGERRALPNASIMIHQPSGGFSGQAKNIAVHAKQIVRVWDSLNALYAKHTGKSVEVIQANMDADNFMTPQEAKEFGIIDEVIDQRPITLVSDAVGNEGKDKGSN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0286 241 ProSitePatterns Endopeptidase Clp histidine active site. 141 154 IPR033135 -
Vra2g0286 241 SUPERFAMILY ClpP/crotonase 32 221 IPR029045 -
Vra2g0286 241 ProSitePatterns Endopeptidase Clp serine active site. 119 130 IPR018215 -
Vra2g0286 241 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 23 240 - -
Vra2g0286 241 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 32 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 Gene3D - 19 226 - -
Vra2g0286 241 PRINTS Clp protease catalytic subunit P signature 48 63 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 PRINTS Clp protease catalytic subunit P signature 88 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 PRINTS Clp protease catalytic subunit P signature 119 136 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 PRINTS Clp protease catalytic subunit P signature 140 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 PRINTS Clp protease catalytic subunit P signature 197 216 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 CDD S14_ClpP_2 48 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vra2g0286 241 Pfam Clp protease 42 221 IPR023562 -
Vra2g0286 241 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 23 240 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0286 Vra-Chr2 2161247 2162893 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0286 K01358 - gmx:100782585 390.578