Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0276 ATGGCTTTGTCTTCACTTATTTCCAATATTCTTCTTCTCCTCCTTTTCTCTTTCACCAAAGAAGCTTTATCTGTGTCAAAGCTTTCAGTAACTGATAATGATAATTACGTTAGCCGGGAAATACTGGCAGAACAAGAAGCTGACAGAGTTTACGGATTACCAGGGCAACCAGCAGTGAAATTCAAACAATATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAAGCCACTCACAAACCAGAAGAAAAACCAGTTCTATTGTGGCTCAATGGAGGCCCAGGTTGTTCCTCAATAGGTTATGGAGAAGCAGAGGAATTGGGACCCTTCTTTCCCCAGGACAGTAGCCAGCCAAAGCTAAAGTTGAACCCTTATTCATGGAACAATGCTGTCAATCTTCTGTTTTTGGAAAGCCCTGTCGGAGTGGGATTTTCCTACACCAACACCAGCAGTGACATAATTGAGCTTGGTGACAGCATTACTGCTAAAGATTCACACATCTTTGTCATCAAGTGGTTTAGGAGGTTCCCACAATTCAGATCACACAAGTTCTACATTGCCGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTTCTGAGCTTATCTTCGATAACAATCTCAACCACGCTGAAAAAGACTACATTAACTTCAAAGGTTTTCTGATTGGAAATGCATTATTGGACGACGAAACAGATCAAAAGGGTATGATAGATTATGCATGGGATCATGCAGTGATATCTGATGCACTATACCACAACATCACAGCCATATGCGATTTCAATCATCCAATTCAAAACCAGACAAACGAATGCAACACGGAACTGAATAAGTACTTCGATGTGTATAAGATTATTGACATGTATAGCTTGTACACTCCCAGGTGTTTCAGCAACCTCAGCAGCACCTCCACAAACGAAGCCTCTCAAACTTCTTCCAAAATTAATAGGTGGCAAAGAAAACGAGCTGGATATGATCCCTGTGCATCCGATTACACTGAAGTTTACCTGAACAGACCAGAAGTCCAAAAGGCACTGCATGCCAATGTCACAAAAATTCCCTATCCATGGACTCACTGCAGTGATAACATCACATTCTGGAATGACTCACCACAGTCCATTCTTCCTGTCCTCAAGAAGCTTGTTGCTGGTGGTCTTCGCATCTGGGTTTTCAGTGGAGACACTGATGGAAGAATTCCAGTAACAGCAACAAGATACACACTGAGAAAGCTGGGACTTGGAATTGTAGAGGATTGGAGTCCATGGTATACTAGCCGTCAGGTGGGAGGATGGAGCATCGTGTATGATGGACTTACTTTTGTTACCATAAGAGGTGCTGGCCATCAAGTTCCAACTTTCACTCCCAAGCAAGCTCTGCAGTTACTTCGACACTTCATAGATAATAAGAAATTACCATCTCGACCAATTTAA 1455 0.4213 MALSSLISNILLLLLFSFTKEALSVSKLSVTDNDNYVSREILAEQEADRVYGLPGQPAVKFKQYAGYITVNETHGRALFYWFFEATHKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQDSSQPKLKLNPYSWNNAVNLLFLESPVGVGFSYTNTSSDIIELGDSITAKDSHIFVIKWFRRFPQFRSHKFYIAGESYAGHYVPQLSELIFDNNLNHAEKDYINFKGFLIGNALLDDETDQKGMIDYAWDHAVISDALYHNITAICDFNHPIQNQTNECNTELNKYFDVYKIIDMYSLYTPRCFSNLSSTSTNEASQTSSKINRWQRKRAGYDPCASDYTEVYLNRPEVQKALHANVTKIPYPWTHCSDNITFWNDSPQSILPVLKKLVAGGLRIWVFSGDTDGRIPVTATRYTLRKLGLGIVEDWSPWYTSRQVGGWSIVYDGLTFVTIRGAGHQVPTFTPKQALQLLRHFIDNKKLPSRPI* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0276 484 Gene3D - 336 373 - -
Vra2g0276 484 SUPERFAMILY alpha/beta-Hydrolases 45 479 IPR029058 -
Vra2g0276 484 Gene3D alpha/beta hydrolase 44 306 IPR029058 -
Vra2g0276 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 483 IPR001563 GO:0004185|GO:0006508
Vra2g0276 484 Gene3D - 382 475 - -
Vra2g0276 484 Pfam Serine carboxypeptidase 55 476 IPR001563 GO:0004185|GO:0006508
Vra2g0276 484 PANTHER CARBOXYPEPTIDASE 34 483 - -
Vra2g0276 484 ProSitePatterns Serine carboxypeptidases, histidine active site. 446 463 IPR033124 GO:0004185
Vra2g0276 484 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vra2g0276 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vra2g0276 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vra2g0276 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vra2g0276 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 446 459 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0276 Vra-Chr2 2076215 2081581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0276 344 479 Calmodulin-binding Proteins AT2G22960 29.197 6.63e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0276 K16297 - gmx:100797264 860.522